Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43400 262 / 9e-84 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G43390 262 / 9e-84 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G13210 215 / 1e-65 Uncharacterised conserved protein UCP015417, vWA (.1) AT3G24780 173 / 8e-50 Uncharacterised conserved protein UCP015417, vWA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041147 [exp] 335 / 7e-111 AT5G43400 823 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10021875 [exp] 333 / 3e-110 AT5G43390 803 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10016989 [exp] 137 / 5e-37 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10016990 [exp] 105 / 2e-27 AT5G43400 318 / 7e-106 Uncharacterised conserved protein UCP015417, vWA (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G165200 [exp] 240 / 2e-75 AT5G13210 851 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Potri.009G091400 [exp] 117 / 6e-30 AT5G43400 339 / 3e-108 Uncharacterised conserved protein UCP015417, vWA (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11443 [flax] [poplar] DUF2828 Domain of unknown function (DUF2828)
Representative CDS sequence Show only first row Show all	>Lus10013399 pacid=23155060 polypeptide=Lus10013399 locus=Lus10013399.g ID=Lus10013399.BGIv1.0 annot-version=v1.0 ATGGCCGCATCTGAAATCCAGGTTCAAACTGAAAATGTTGACGATTGCAGTTACTTGGATGAAACTTGCAACAGAGCTTCCGCAGAAAAAGAACCGCTTA AGTTATATATTTATGATTCATCTGGGATCATCAGACTTCATGTTGTTGTCAATATGCTAAGTGAGGAGCCATGGAAAGGGAAAGTGATCACATTCGGTGA AAATCCGGAGATGCATCTGGTGGAGGGAAGCAGTCTGAAGGAGAAGATTGAGTTCATTAGGAGGATGGATTGGGGAGGGAGCACAAATTTTTACAAGGTG TTCGATAAGATCCTGGAGACAGCAGTTGCAAACAAGCTGACTGAGGATCAACTGATCAAAAGGGTTTTTGTGTTCAGCGACATGGAATTCCACTCTGCAT CAACGGTCTACAACTATCACTATGGATCTGCATACAACAACAGCAAGGAGGAGGTGATGAACAAGTGGGAAACAGATTATGAAGCAATAGAGAGGAAGTT CGGGGAGAAAGGATACAAGAAGGTGCCGGAGGTAGTGTTCTGGAATCTGAGGGATTCGGAGGCTACACCAGTGTCGGGAACTCAGAATGGGGTGGCTCTG GTGAGCGGGTTTTCAAAGAATTTGCTGACAATGTTTATGGATGGGGGTGGAATTGTGAATCCAGAAGATGTCATGGGATTAGCTATTGCTGGAGAAGAGT ATCAGAAGCTTGTCGTACATGACTGA
AA sequence Show only first row Show all	>Lus10013399 pacid=23155060 polypeptide=Lus10013399 locus=Lus10013399.g ID=Lus10013399.BGIv1.0 annot-version=v1.0 MAASEIQVQTENVDDCSYLDETCNRASAEKEPLKLYIYDSSGIIRLHVVVNMLSEEPWKGKVITFGENPEMHLVEGSSLKEKIEFIRRMDWGGSTNFYKV FDKILETAVANKLTEDQLIKRVFVFSDMEFHSASTVYNYHYGSAYNNSKEEVMNKWETDYEAIERKFGEKGYKKVPEVVFWNLRDSEATPVSGTQNGVAL VSGFSKNLLTMFMDGGGIVNPEDVMGLAIAGEEYQKLVVHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43400			Uncharacterised conserved prot...		Lus10013399 [exp]	0	1
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	3.3	0.8590
					Lus10039878 [exp]	3.5	0.8473
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031266 [exp]	6.6	0.8460
AT5G08060			unknown protein		Lus10040513 [exp]	9.1	0.8524
AT5G25500			unknown protein		Lus10002031 [exp]	9.5	0.8413
AT3G58900			F-box/RNI-like superfamily pro...		Lus10035564 [exp]	14.5	0.7846
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	14.7	0.8160
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036088 [exp]	16.1	0.8318
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	17.9	0.8270
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	20.0	0.8280

Compare expression of checked genes

Lus10013399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.