Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12170 314 / 7e-108 Chaperone DnaJ-domain superfamily protein (.1) AT5G06910 283 / 3e-95 ATJ6, EMB1393 J-domain protein 6 (.1) AT3G62600 74 / 1e-14 ATERDJ3B DNAJ heat shock family protein (.1) AT5G48030 73 / 2e-14 GFA2 gametophytic factor 2 (.1) AT5G03160 73 / 3e-14 ATP58IPK homolog of mamallian P58IPK (.1) AT4G39150 72 / 3e-14 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT5G01390 70 / 5e-14 DNAJ heat shock family protein (.1.2.3.4) AT1G59980 71 / 1e-13 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G56300 68 / 1e-13 Chaperone DnaJ-domain superfamily protein (.1) AT2G21510 70 / 2e-13 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010323 [exp] 442 / 6e-158 AT3G12170 363 / 4e-127 Chaperone DnaJ-domain superfamily protein (.1) Lus10026315 [exp] 348 / 6e-121 AT3G12170 355 / 3e-124 Chaperone DnaJ-domain superfamily protein (.1) Lus10042353 [exp] 344 / 4e-119 AT3G12170 356 / 1e-124 Chaperone DnaJ-domain superfamily protein (.1) Lus10022297 [exp] 76 / 2e-15 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10035855 [exp] 75 / 7e-15 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 74 / 1e-14 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10011934 [exp] 74 / 2e-14 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10014584 [exp] 73 / 3e-14 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 72 / 3e-14 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G056400 [exp] 341 / 5e-118 AT3G12170 370 / 5e-130 Chaperone DnaJ-domain superfamily protein (.1) Potri.016G051800 [exp] 340 / 1e-117 AT3G12170 353 / 2e-123 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G122600 [exp] 75 / 4e-15 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 74 / 1e-14 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.010G013200 [exp] 73 / 2e-14 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.009G065500 [exp] 72 / 5e-14 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.017G016100 [exp] 71 / 6e-14 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 71 / 7e-14 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.016G120000 [exp] 70 / 3e-13 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G271300 [exp] 69 / 5e-13 AT5G48030 530 / 0.0 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10013402 pacid=23155132 polypeptide=Lus10013402 locus=Lus10013402.g ID=Lus10013402.BGIv1.0 annot-version=v1.0 ATGGGGAAGAGAAAGAACTCTAGGGTTCCCGTCGAAGAAGAGGACATCGAAATCGATGACGAGGAGCAACAGGAGAATGAGAGTGGGAAGAGCCCTTCTT CCTCCTCCGCCAATCAGGAGAAGAGCCTATACCAGGTACTTGGTGTTGAAAATACAGCTTCTCGGCAGGAGATTAAGAAAGCTTACCACAAATTGGCCCT TAGACTCCATCCTGACAAAAATCCGGGTGATGAGGAAGCTAATGAGAAGTTTCAGCAATTGCAAAAGGTGATGTCAATCCTTGGAGATGAGGAGAAACGG GCAGTGTATGACCAAACTGGTTGTGTTGATGATGCTGATCTTGCAGGGGACGTTGTGCAAAACTTGAAAGACTTCTTCAGAACCATGTACAAAAAGGTCA CTGAAGCTGATATTGATGAGTTTTATGCAACTTATAGAGGGTCTGATTCAGAGAGAAATGATCTGATCGACCTTTACAAGAAGCACAAGGGTAATATGAA TAGGCTCTTCTGCTCAATGCTTTGTTCTGACCCAAAGCTTGATTCACACCGCTTCAAAGACATTATGGATGAGACAATAGCTAAAGGAGAAGTGAAAGAA ACTAAAGCTTACAAGAAATGGGCAAAGAAAATCTCAGAGATCAAGCCGCCTACGAGCCCTCCGAGGAAGAGGAAGCCAAGCAAGGAGTACGAAGAAAATG TATTAGCCGCGATAACACAGCGGAGAAGTGAGAGGAAAGGTCAGTTTGAATCGATGTTCTCATCTATGGTAGCCAAATATGGCGGCGGCAAAAATGGTTC GTCTTCAGAACCAACTGAGGAAGAATTCGAAGCTGCAAGGAAGAAACTCGAAAGCCGCAGGTCAACATCCAAGAAAGGGAAGGGAAAGGGAAAGTAA
AA sequence Show only first row Show all	>Lus10013402 pacid=23155132 polypeptide=Lus10013402 locus=Lus10013402.g ID=Lus10013402.BGIv1.0 annot-version=v1.0 MGKRKNSRVPVEEEDIEIDDEEQQENESGKSPSSSSANQEKSLYQVLGVENTASRQEIKKAYHKLALRLHPDKNPGDEEANEKFQQLQKVMSILGDEEKR AVYDQTGCVDDADLAGDVVQNLKDFFRTMYKKVTEADIDEFYATYRGSDSERNDLIDLYKKHKGNMNRLFCSMLCSDPKLDSHRFKDIMDETIAKGEVKE TKAYKKWAKKISEIKPPTSPPRKRKPSKEYEENVLAAITQRRSERKGQFESMFSSMVAKYGGGKNGSSSEPTEEEFEAARKKLESRRSTSKKGKGKGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	0	1
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	3.5	0.8912
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	3.6	0.9057
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	6.0	0.8615
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029625 [exp]	6.9	0.8529
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10023926 [exp]	7.1	0.8318
AT1G03280			Transcription factor TFIIE, al...		Lus10011554 [exp]	9.6	0.8775
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Lus10036032 [exp]	16.5	0.8366
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10005677 [exp]	16.7	0.8395
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10015627 [exp]	27.0	0.8132
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10003604 [exp]	27.2	0.8039

Compare expression of checked genes

Lus10013402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.