Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55480 394 / 8e-138 ZKT protein containing PDZ domain, a K-box domain, and a TPR region (.1) AT5G17170 55 / 2e-08 ENH1 enhancer of sos3-1, rubredoxin family protein (.1.2) AT1G02910 54 / 5e-08 LPA1 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010322 [exp] 578 / 0 AT1G55480 401 / 1e-140 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Lus10003157 [exp] 53 / 8e-08 AT5G17170 377 / 3e-133 enhancer of sos3-1, rubredoxin family protein (.1.2) Lus10010280 [exp] 51 / 7e-07 AT1G02910 610 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10036345 [exp] 51 / 7e-07 AT1G02910 620 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222200 [exp] 423 / 5e-149 AT1G55480 405 / 4e-142 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Potri.001G002700 [exp] 312 / 3e-105 AT1G55480 303 / 1e-101 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Potri.002G206300 [exp] 54 / 7e-08 AT1G02910 615 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.019G042600 [exp] 53 / 7e-08 AT5G17170 301 / 3e-103 enhancer of sos3-1, rubredoxin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013403 pacid=23155066 polypeptide=Lus10013403 locus=Lus10013403.g ID=Lus10013403.BGIv1.0 annot-version=v1.0 ATGTCTTTAGCCGCTGCTGCTACTTCTTCTTCTTCCGCTGCAACAAGTTGCAGCAGCAATGGCGGCCGCCGTGGAAGAAGCTACCCACCGCATCCTCCTC TCCTCCAAACGCCAATCGCAAGGATCAGTTTCGGGGCAAGAAGAACCCAAAACCCACCACTTGTCGGTTTCCAAGAGAAGAAGAAGCACTTGGTGATGGT GAAAGCGACGCAGAAGGAGCAAGCGTCGGAGGAAGAAGAGGAAGGTAAGAAGTATGAGGAGTACGAGGTGGAGCTTGATCAGCCGTACGGCCTCAAGTTT GCCAAGGGGAGAGATGGTGGGACTTACATTGACGCTATTGCCCCCGGTGGCGCCGCCGATAAGACCGGCCTCTTCACTGTCGGTGACAGAGTCGTTGCTA CCAGTGCGGTGTTTGGGACGGAGATGTGGCCGGCGGCGGAGTATGGGAGGACCATGTACACCATCCGCCAGCGGATTGGTCCGTTGCTCATGCGTATGCA GAAGCGATACGGGAGCACGGAATACTCTGGTGAATTAACAGAGAAGGAGATTATAAGGGCTGAAAGGAACTCTGGTGTTGTTAGTAACAAAGTCAGGGAG ATTCAACTCCAAAATTACATGCGGAAAATGGAACAGAAGCAGCAACGAGCGGACGATCTTCGTCAAGGTCTCCAGCTCTACAAGGAGGCTGATGAGGAGG AGTCGTTGGAGAGATTCGAGTCGGTGTTGGGGTCGAAACCTGAACTGGATGAAGCTGCTGTAGCAAGTTACAACGTTGCCTGCTGCTACTCGAAGCTTGA CCAGGTGCAAGCTGGGTTATCTGCCCTCGAGGATGCCATGAAATCAGGATTCGAGGACTTCAAGAGAATCAGAACAGATCCAGACCTAACTAATGTGAGG GCGTCGCCTGGTTTTCAGCCTCTGATCAAGAGATTTGACGAATCCTTGATCAATGAGGATGCCATCAATGCTATCAAGTCCCTGTTCGGTTTCAAAAGCA AATAG
AA sequence Show only first row Show all	>Lus10013403 pacid=23155066 polypeptide=Lus10013403 locus=Lus10013403.g ID=Lus10013403.BGIv1.0 annot-version=v1.0 MSLAAAATSSSSAATSCSSNGGRRGRSYPPHPPLLQTPIARISFGARRTQNPPLVGFQEKKKHLVMVKATQKEQASEEEEEGKKYEEYEVELDQPYGLKF AKGRDGGTYIDAIAPGGAADKTGLFTVGDRVVATSAVFGTEMWPAAEYGRTMYTIRQRIGPLLMRMQKRYGSTEYSGELTEKEIIRAERNSGVVSNKVRE IQLQNYMRKMEQKQQRADDLRQGLQLYKEADEEESLERFESVLGSKPELDEAAVASYNVACCYSKLDQVQAGLSALEDAMKSGFEDFKRIRTDPDLTNVR ASPGFQPLIKRFDESLINEDAINAIKSLFGFKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10013403 [exp]	0	1
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	1.0	0.9781
AT1G78995			unknown protein		Lus10034782 [exp]	3.0	0.9335
AT5G07020			proline-rich family protein (....		Lus10024125 [exp]	3.7	0.9555
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10017195 [exp]	5.3	0.9490
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10013448 [exp]	6.7	0.9532
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10033572 [exp]	6.7	0.9270
AT3G60750			Transketolase (.1.2)		Lus10031708 [exp]	6.9	0.9383
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10017597 [exp]	7.4	0.9440
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10009172 [exp]	8.1	0.9423
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10033558 [exp]	10.2	0.9410

Compare expression of checked genes

Lus10013403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.