Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13470 991 / 0 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT1G55490 978 / 0 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT5G56500 972 / 0 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT1G26230 733 / 0 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT2G28000 493 / 1e-168 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT3G23990 469 / 9e-160 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 456 / 1e-154 HSP60-2 heat shock protein 60-2 (.1.2) AT3G13860 431 / 6e-145 HSP60-3A heat shock protein 60-3A (.1) AT5G18820 423 / 9e-142 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 62 / 6e-10 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010321 [exp] 1132 / 0 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10030917 [exp] 715 / 0 AT1G26230 863 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Lus10037386 [exp] 488 / 8e-167 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10011898 [exp] 466 / 2e-158 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10022832 [exp] 465 / 6e-158 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 464 / 8e-158 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011770 [exp] 455 / 1e-152 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10041329 [exp] 438 / 8e-148 AT2G28000 845 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10038352 [exp] 436 / 2e-146 AT5G18820 767 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222400 [exp] 1051 / 0 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.001G002500 [exp] 1036 / 0 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.010G135100 [exp] 732 / 0 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.004G213400 [exp] 510 / 2e-175 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.009G009300 [exp] 504 / 5e-173 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.001G054400 [exp] 472 / 9e-161 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G173900 [exp] 469 / 1e-159 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.002G252900 [exp] 468 / 5e-159 AT3G23990 995 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.015G122800 [exp] 460 / 7e-156 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.003G039475 [exp] 369 / 1e-120 AT3G13860 810 / 0.0 heat shock protein 60-3A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10013404 pacid=23155102 polypeptide=Lus10013404 locus=Lus10013404.g ID=Lus10013404.BGIv1.0 annot-version=v1.0 ATGGCTTCAACCTTCACTGCTATGTCTTCAGTTGGAACCTTGGCAGCCCCTAGTGGCCGTCTTATGGATAAGAAACAGTCAAACAAACTGTCTTCACTCG CTTCCTTTTCTGGTAGAAGACAGAATGTTGTTTTGAGAAATTCACGTCTGCCTATGACCTGTAAGGCTGCCAAGGAGCTGCATTTCAACAAAGATGGTTC TGCAATCAGGAAGCTCCAGATTGGTGTGAACAAGCTTGCTGACCTAGTTGGAGTTACTCTGGGTCCCAAAGGTAGAAACGTTGTTCTTGAGAGCAAGTAT GGATCTCCAAAGATTGTCAACGATGGTGTGACTGTTGCTAAAGAGGTTGAACTGGAGGACCCAGTTGAGAACATTGGTGCTAAGTTGGTAAGGCAGGCAG CTGCAAAGACTAACGACTTGGCTGGTGATGGCACAACAACATCTGTTGTCCTTGCACAAGGCCTTATTGCCGAAGGTGTAAAGGTTGTGGCTGCTGGTGC TAACCCTGTCCTAATTACTCGAGGCATCGAGAAGACCACAAAGGCCCTTGTTACTGAACTCAAGTTAATGTCTAAGGAGGTTGAAGACAGTGAGCTAGCT GATGTTGCTGCCGTTAGTGCTGGTAACAATTATGAAGTAGGGAGTATGATCGCTGAAGCAATGAGCAAAGTTGGACGAAAGGGAGTTGTAACTTTGGAAG AGGGAAAAAGTGCAGAAAACAACCTTTATGTTGTTGAGGGGATGCAGTTTGACCGTGGTTATATCTCACCTTACTTTGTAACCGACAGTGAGAAGATGAC TGTTGAATACGATAACTGCAAGCTGCTTTTGGTTGACAAGAAAATAACCAGTGCAAGGGATCTGATTAGCATCCTAGAAGATGCAATTAGAAGTGGATTC CCCATTGTGATTATTGCCGAAGACATCGAACAAGAAGCTCTTGCAACAATTGTCGTGAACAAGCTTAGAGGGTCACTAAAGATTGCTGCTTTGAAAGCTC CCGGATTTGGTGACAGGAAAAGCCAGTATCTTGACGATATTGCTATTCTTACCGGAGGAACTGTCATCAGAGATGAAGTTGGTCTTTCTTTGGACAAAGT TGGCCGGGAGGTACTTGGAACTGCCTCGAAGATCGTGCTTACCAAGGACACAACCACAATTGTTGGAGACGGTAGCACTCAGGAAGCAGTAAACAAGAGA GTAGCGCAAATTAAGAATCTCATTGAGGCTGCGGAGCAAGATTACGAGAGGGAAAAACTTAATGAAAGAATTGCGAAGCTTTCTGGTGGTGTTGCTGTGA TCCAAGTTGGGGCACAGACCGAGACCGAGCTGAAAGAGAAGAAATTGAGGGTTGAAGATGCCCTGAATGCAACTAAGGCTGCTGTGGAAGAAGGTATTGT AGTTGGTGGTGGTTGCACTTTGCTCAGACTTGCAGCCAAAGTTGATGCCATTAAGGAGACTCTTGCAAATGACGAAGAAAAGGTTGGAGCAGATATTGTG AAGAGAGCTCTAAGCTACCCATTGAAGTTAATTGCCAAGAATGCAGGAGTTAACGGTAGTGTTGTCAGTGAGAAGGTTCTGTCGAGTGACAACCCGAAAT TTGGGTACAACGCAGCGACCGGGAAGTATGAGGACCTAATGGCGGCTGGAATCATCGATCCAACAAAGGTGGTGAGGTGCTGCTTGGAGCATGCTTCTTC AGTGGCAAAGACATTCTTGATGTCCGACTGTGTAGTGGTGGAGATCAAGGAGCCAGAGCCAGTAGTTGCTGGGAACCCCATGGACAACTCAGGTGAGGGA GCAATGAAAAACTAG
AA sequence Show only first row Show all	>Lus10013404 pacid=23155102 polypeptide=Lus10013404 locus=Lus10013404.g ID=Lus10013404.BGIv1.0 annot-version=v1.0 MASTFTAMSSVGTLAAPSGRLMDKKQSNKLSSLASFSGRRQNVVLRNSRLPMTCKAAKELHFNKDGSAIRKLQIGVNKLADLVGVTLGPKGRNVVLESKY GSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVTELKLMSKEVEDSELA DVAAVSAGNNYEVGSMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMTVEYDNCKLLLVDKKITSARDLISILEDAIRSGF PIVIIAEDIEQEALATIVVNKLRGSLKIAALKAPGFGDRKSQYLDDIAILTGGTVIRDEVGLSLDKVGREVLGTASKIVLTKDTTTIVGDGSTQEAVNKR VAQIKNLIEAAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAIKETLANDEEKVGADIV KRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPVVAGNPMDNSGEG AMKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10013404 [exp]	0	1
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10037386 [exp]	1.0	0.9653
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10041329 [exp]	1.4	0.9505
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10036843 [exp]	3.0	0.9265
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10019206 [exp]	6.3	0.8652
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	6.5	0.8997
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028799 [exp]	8.1	0.7838
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10011129 [exp]	8.7	0.9001
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10041031 [exp]	9.2	0.8305
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10016196 [exp]	9.4	0.9093
AT4G29840		TS, MTO2	THREONINE SYNTHASE, METHIONINE...		Lus10008462 [exp]	9.8	0.8490

Compare expression of checked genes

Lus10013404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.