Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56460 607 / 0 Protein kinase superfamily protein (.1) AT5G01020 430 / 6e-150 Protein kinase superfamily protein (.1) AT2G26290 390 / 5e-134 ARSK1 root-specific kinase 1 (.1) AT2G05940 390 / 2e-133 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT2G07180 389 / 2e-133 Protein kinase superfamily protein (.1.2) AT3G28690 375 / 1e-127 Protein kinase superfamily protein (.1.2.3) AT1G61590 372 / 5e-127 Protein kinase superfamily protein (.1) AT5G15080 373 / 3e-126 Protein kinase superfamily protein (.1) AT5G35580 370 / 2e-125 Protein kinase superfamily protein (.1) AT3G01300 368 / 2e-124 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010319 [exp] 759 / 0 AT5G56460 613 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 423 / 3e-146 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 395 / 8e-135 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 394 / 2e-134 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10006643 [exp] 392 / 2e-134 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10034897 [exp] 394 / 3e-134 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10038087 [exp] 389 / 3e-133 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10033429 [exp] 390 / 1e-132 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10040588 [exp] 382 / 2e-130 AT2G07180 582 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222600 [exp] 610 / 0 AT5G56460 585 / 0.0 Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 599 / 0 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 442 / 1e-154 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 439 / 4e-153 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 402 / 2e-138 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 397 / 3e-136 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 396 / 1e-135 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 394 / 3e-135 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 394 / 5e-135 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 387 / 8e-133 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10013406 pacid=23155142 polypeptide=Lus10013406 locus=Lus10013406.g ID=Lus10013406.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCTGGTATAGAGGGCAGCCTTCTGTATACAGAGTCTCTTCAAATGCAAAACCAGAATCTCCAAAAGAGCAATGCACATCAGATAAACCAA GGAAGGACATGTGGAAACTGCCTTCCAATCCTGAAGAAGTAGAAGACTTTCGCCGCGATTCAGCAGCCAATCCTTTAGTTGCATTCACCTTCGAGGAGCT GAAGAAGATGACTGGGAATTTCAGGCAAGACAAGGTGCTTGGGGGAGGAGGCTTTGGAAATGTTTATAAAGGTCTCATAACTGATGACCTTAGAGATGGC ACCCTGCAGCCTGTTCAAGTTGCTGTCAAAGTTCATGATGGCCACAATAGTTACCAAGGCCATAGAGAATGGCTGGCAGAGGTCATATTCCTAGGGCAGC TTTCACACCCAAATCTGGTGAAGTTGATTGGATATTGCTGCGAGGACGAGCACCGAGTCCTGATATACGAGTATATGTGTCGGGGCAGTGTGGAGAGCAA TCTGTTTTCAAGAGTAGTACTTCCACTTTCGTGGAAGATCAGAATGAAGATTGCATTTGGTGCAGCAAAAGGACTTGCCTTTCTGCATGAAGCTGAAAAG CCTGTCATTTACCGCGACTTTAAAACCTCCAACATTTTATTAGACGGGGACTACAATGCCAAGCTCTCAGACTTCGGCCTTGCTAAGGATGGACCTATGG GGGATAAAACTCATGTTTCCACCCGCATAATGGGCACGTACGGATATGCAGCACCGGAATATATAATGACAGGCCATCTCACACCAAGAAGTGATGTATA CAGCTTCGGCGTTGTTCTTCTTGAACTTCTAACGGGAAGAAAATCTCTAGACAAATCCAAACCCACAAGAGAGCAAAACCTTATAGATTGGGCGCTTCCG CTGCTGAAAGAGAAGAAGAAATTGCTTAATATGGTTGACCCAAGATTAGAAGGAGACTATCCTGTTAAAGCTGTTCACAAAGCAGCAATGCTAGCATATC ATTGCTTGAATAAAAATCCCAAAGCCAGACCTTTAATGCGAGATATAGTTGATTCTCTGGAGCCTTTGCAGGTAGCTGAATTGCTTCCCCACGAAAAAGG CATGGTCACTGTGATTAGTGTCATACCTGAAGGTACTGAGACAAAAGAGAAAGAGGACGCAAAATAG
AA sequence Show only first row Show all	>Lus10013406 pacid=23155142 polypeptide=Lus10013406 locus=Lus10013406.g ID=Lus10013406.BGIv1.0 annot-version=v1.0 MGNCWYRGQPSVYRVSSNAKPESPKEQCTSDKPRKDMWKLPSNPEEVEDFRRDSAANPLVAFTFEELKKMTGNFRQDKVLGGGGFGNVYKGLITDDLRDG TLQPVQVAVKVHDGHNSYQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMCRGSVESNLFSRVVLPLSWKIRMKIAFGAAKGLAFLHEAEK PVIYRDFKTSNILLDGDYNAKLSDFGLAKDGPMGDKTHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKSKPTREQNLIDWALP LLKEKKKLLNMVDPRLEGDYPVKAVHKAAMLAYHCLNKNPKARPLMRDIVDSLEPLQVAELLPHEKGMVTVISVIPEGTETKEKEDAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56460			Protein kinase superfamily pro...		Lus10013406 [exp]	0	1
AT2G46550			unknown protein		Lus10023163 [exp]	2.0	0.8849
AT1G50170		ATSIRB	sirohydrochlorin ferrochelatas...		Lus10008769 [exp]	4.7	0.8358
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	5.3	0.8829
					Lus10023370 [exp]	6.7	0.8830
AT4G10390			Protein kinase superfamily pro...		Lus10013656 [exp]	6.8	0.8845
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	9.5	0.8526
AT1G54150			E3 Ubiquitin ligase family pro...		Lus10000533 [exp]	11.3	0.8472
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Lus10016670 [exp]	11.5	0.8559
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10039992 [exp]	13.0	0.8222
AT1G47410			unknown protein		Lus10006481 [exp]	14.7	0.8761

Compare expression of checked genes

Lus10013406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.