Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010318 [exp] 130 / 3e-40 AT3G13480 47 / 4e-07 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013407 pacid=23155105 polypeptide=Lus10013407 locus=Lus10013407.g ID=Lus10013407.BGIv1.0 annot-version=v1.0 ATGAGGGTAGTGGCGTGCAACATCCACAGTCCTTTGCTTTGCTTGTGCAAGTGCAACGCATCAGATAGCATCTGCAGCCATCATCAGGTGCCAGCTTGTT CAATCTCATCAACTGATGAGAACATTCAACCCAAAGAGGAGAAGAAGGAAGGAGGAAAAGAGGAGAAGAGGAGGAGTTGCATTGCAAGCCAAGCTGCCTC GGGAGAGAAGGATAATGATAATAAGAAGAAGCATAAGAAGAAAGTGCAGTGGATGGATTTGGTTGGGAAACCACTGTTCGAGATCAGAGAATTTGAACTC ACCAGGTTTTAA
AA sequence Show only first row Show all	>Lus10013407 pacid=23155105 polypeptide=Lus10013407 locus=Lus10013407.g ID=Lus10013407.BGIv1.0 annot-version=v1.0 MRVVACNIHSPLLCLCKCNASDSICSHHQVPACSISSTDENIQPKEEKKEGGKEEKRRSCIASQAASGEKDNDNKKKHKKKVQWMDLVGKPLFEIREFEL TRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13480			unknown protein		Lus10013407 [exp]	0	1
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	7.0	0.9529
AT1G05060			unknown protein		Lus10030021 [exp]	8.2	0.9499
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025898 [exp]	12.3	0.9407
AT1G05060			unknown protein		Lus10035303 [exp]	13.7	0.9355
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Lus10007635 [exp]	14.1	0.8834
AT1G58070			unknown protein		Lus10015482 [exp]	14.6	0.9466
AT3G16210			F-box family protein (.1)		Lus10015408 [exp]	14.8	0.9204
AT3G54450			Major facilitator superfamily ...		Lus10024156 [exp]	16.6	0.9380
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	22.8	0.9401
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	25.8	0.9311

Compare expression of checked genes

Lus10013407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.