Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13490 838 / 0 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) AT3G11710 329 / 8e-105 ATKRS-1 lysyl-tRNA synthetase 1 (.1) AT4G26870 88 / 3e-18 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G33760 74 / 2e-13 tRNA synthetase class II (D, K and N) family protein (.1) AT4G31180 66 / 6e-11 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT3G30805 51 / 2e-07 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010317 [exp] 998 / 0 AT3G13490 827 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10001440 [exp] 325 / 3e-103 AT3G11710 912 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10001625 [exp] 319 / 5e-101 AT3G11710 900 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10018862 [exp] 71 / 1e-12 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10037243 [exp] 71 / 1e-12 AT4G33760 1033 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Lus10028555 [exp] 63 / 4e-10 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10035657 [exp] 51 / 2e-06 AT4G33760 688 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G221600 [exp] 880 / 0 AT3G13490 897 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Potri.018G090600 [exp] 323 / 7e-103 AT3G11710 937 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.018G090400 [exp] 323 / 1e-102 AT3G11710 946 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.006G166000 [exp] 319 / 3e-101 AT3G11710 936 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.009G084300 [exp] 82 / 4e-16 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.001G289001 [exp] 73 / 3e-13 AT4G33760 998 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.006G085400 [exp] 66 / 6e-11 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N) CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10013408 pacid=23155091 polypeptide=Lus10013408 locus=Lus10013408.g ID=Lus10013408.BGIv1.0 annot-version=v1.0 ATGGAGGCACTGAAGGTGCTCCGTCTATCCGTCAGACCATTCCATCGTCACCTTCTCCATTTCAATTCTTCCTTCCCCTCTCCAACTTCCTATTCTACTT TCGTGCTCCGCTGTTGTTCCCCTGCCGCCGCCGGACAAGGCGTCGCCTCCCCCAAGCTTGCCGCCCGAAACCGCCGTTCCTCTTCCAGCAACGCCCCTTC TTCCTCCTCCTCTACTTCCGACCGTGACGCTATTCGCTCTCTCAGGTTGAAAAAGGTTGAGGAACTGAGGAGCAAAGGTTATGAGCCATATGCGTACAGT TGGGATCGGACTCACTCTGCCAATCAACTGCAGGAGCTATACAAAGATTTAGGAAATGGTGAAGAATCAACAAGTGAGAGTGATCATGTATCCATTGCAG GGAGGATTGTTGCCCGCAGGGCTTTTGGAAAGCTTGCTTTTTTGACACTTAGAGATGACTCTGGCACAATTCAGCTTTACTGTGAGAAAGAGAAGCTTCT GGATGACCAATTTAACCAGCTGAAGAATTATGTTGATATTGGTGACATATTGGGAGCTAACGGTTCGATGAAGCGCACAGACAAAGGAGAACTGTCTGTT TGTGTAAAATCTTTCACAATTCTTACCAAGTCTCTTCTTCCACTTCCGGACAAGTATCATGGTTTAACAGATGTTGACAAGCGATATCGCCAGCGATACG TTGATATGATAGCAAATCCTGAAGTAGTCGATGTATTTCGCAAAAGAGCAAAGATAGTTTCAGAAATTCGCAAGACCGTGGAACACTTGGGTTTTATTGA AGTTGATACACCAGTTCTCCAGGGAGCAGCTGGTGGGGCCGAAGCTAGACCATTCGTGACATATCACAATTCACTCGGAAGAGATCTCTATCTCAGGATT GCAACTGAGCTGCATTTAAAGAGAATGTTGGTGGGCGGTATTGAGAAGGTATATGAAATAGGCAGAATATTCAGAAATGAAGGACTTTCACCACGTCATA ATCCTGAGTTTACGACTATCGAGATTTATGAAGCTTATTCAGATTACGAAAGCATGATGAACATGACAGAGGAGATTGTTACAAACTGTGCTTTGGCTGT TCATGGAAAGCTTACAATTGACTACCAGGGGACAGAGATTTGCTTAGAGAGGCCTTGGAGGAGGGAAAGCATGCACAATCTTGTAAAAGAAGCCACTGGT ATAGTTTTCAATCAATTAGGCAATGATCTAACAGTTGCTAAAGAGGTATGTTTGAAGTCGCTTGGACCTGAGCTTGAAAGTAAAGACAGATCCGCTATTG AGATATGTGCTTCTGTAGGTCACCTTCTTAATGAGGTTTTTGAAATTTTCGTCGAATCAAAACTCATGCAACCCACATTCGTCTTGGACTATCCCATTGA GATATCTCCCTTCGCAAAACCACACAGAAGGCATCCAGGGTTGACGGAGAGGTTTGAACTCTTTGTTTGTGGTCGTGAATTGGCCAACGCGTTTTCAGAA TTGACTGATCCAATGGATCAGAGGGTACGATTGGAGGATCAAGTGAGGCAGCACAATGCAAAAAAGGCAGCATCTGGTTCAAGTGCTACCGAAGGCAGCA GCAGCAGCAGTAAGAAAGACGAGGACGATTCATATCAAGTAACACTTGATGACGACTTTCTAACAGCGATGGAATACGGAATGCCTCCTGCCTCTGGATT GGGAATTGGAATCGATAGGCTGGTGATGCTGCTGACCAATTCTGCTAGTATACGCGAAGTCATTGCGTTTCCTGTGCTCAAGATCCAGCAGTAA
AA sequence Show only first row Show all	>Lus10013408 pacid=23155091 polypeptide=Lus10013408 locus=Lus10013408.g ID=Lus10013408.BGIv1.0 annot-version=v1.0 MEALKVLRLSVRPFHRHLLHFNSSFPSPTSYSTFVLRCCSPAAAGQGVASPKLAARNRRSSSSNAPSSSSSTSDRDAIRSLRLKKVEELRSKGYEPYAYS WDRTHSANQLQELYKDLGNGEESTSESDHVSIAGRIVARRAFGKLAFLTLRDDSGTIQLYCEKEKLLDDQFNQLKNYVDIGDILGANGSMKRTDKGELSV CVKSFTILTKSLLPLPDKYHGLTDVDKRYRQRYVDMIANPEVVDVFRKRAKIVSEIRKTVEHLGFIEVDTPVLQGAAGGAEARPFVTYHNSLGRDLYLRI ATELHLKRMLVGGIEKVYEIGRIFRNEGLSPRHNPEFTTIEIYEAYSDYESMMNMTEEIVTNCALAVHGKLTIDYQGTEICLERPWRRESMHNLVKEATG IVFNQLGNDLTVAKEVCLKSLGPELESKDRSAIEICASVGHLLNEVFEIFVESKLMQPTFVLDYPIEISPFAKPHRRHPGLTERFELFVCGRELANAFSE LTDPMDQRVRLEDQVRQHNAKKAASGSSATEGSSSSSKKDEDDSYQVTLDDDFLTAMEYGMPPASGLGIGIDRLVMLLTNSASIREVIAFPVLKIQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10013408 [exp]	0	1
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	1.0	0.9577
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	4.2	0.9455
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005489 [exp]	5.1	0.9099
AT1G55140			Ribonuclease III family protei...		Lus10037645 [exp]	5.7	0.9296
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10013038 [exp]	5.8	0.9056
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	6.7	0.9306
AT5G23690			Polynucleotide adenylyltransfe...		Lus10036013 [exp]	10.4	0.9039
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	11.0	0.9081
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	11.2	0.9244
AT2G13440			glucose-inhibited division fam...		Lus10026055 [exp]	11.3	0.9155

Compare expression of checked genes

Lus10013408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.