Plant FIBer expression Database

Lus10013409 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55365 53 / 1e-09 unknown protein
AT5G56520 44 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010316
[exp]
105 / 7e-30 AT1G55365 85 / 5e-22 unknown protein
Lus10005700
[exp]
42 / 6e-06 AT5G56520 50 / 1e-09 unknown protein
Lus10020285
[exp]
42 / 6e-06 AT5G56520 46 / 3e-08 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G003500
[exp]
59 / 3e-12 AT5G56520 72 / 1e-17 unknown protein
Potri.003G221500
[exp]
58 / 1e-11 AT5G56520 79 / 2e-20 unknown protein
Potri.013G057832
[exp]
43 / 3e-06 ND /
Potri.013G057766
[exp]
41 / 1e-05 ND /
PFAM info
Representative CDS sequence
>Lus10013409 pacid=23155063 polypeptide=Lus10013409 locus=Lus10013409.g ID=Lus10013409.BGIv1.0 annot-version=v1.0
ATGGTGTTTAGCAGCGTCCTAGTTCTATCAGTAGCTCACGTGTCTGCTGAGGCATGTCAGCAGATTTCTTGCCTCCGATTGCAACACCGCCGCCGCCTCA
CTGCTCCTCAGCTCCTTGATCTCCTCTGCTGCTTCCCTCTCCATCAACTCGGCCGCTTCGCTCTCTGCCTCTGGTCTTTCCTCTGCTTGCCACCGCCCGA
TTCCTTCTACTCCTACTCTTACTATTCTTCTTCCCCCTCCGCATCCGATGACGACGAGTCTGACGGCGGCGATTTCGTGGTGGTTCGTTTCCACAATCAA
CTCAGAGGAGACGGAGCTTCATCCTCTTACTCAGCTGATTCCGCTGCCGGTTCTCCTTCCTCCTCCCCTATTCGTATGGATGATTACTACCATCACTCGC
ACTCTGATTGA
AA sequence
>Lus10013409 pacid=23155063 polypeptide=Lus10013409 locus=Lus10013409.g ID=Lus10013409.BGIv1.0 annot-version=v1.0
MVFSSVLVLSVAHVSAEACQQISCLRLQHRRRLTAPQLLDLLCCFPLHQLGRFALCLWSFLCLPPPDSFYSYSYYSSSPSASDDDESDGGDFVVVRFHNQ
LRGDGASSSYSADSAAGSPSSSPIRMDDYYHHSHSD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G55365 unknown protein Lus10013409
[exp]
0 1
AT5G18140 Chaperone DnaJ-domain superfam... Lus10020286
[exp]
13.7 0.6517
AT5G18610 Protein kinase superfamily pro... Lus10036499
[exp]
23.2 0.6580
AT3G57650 LPAT2 lysophosphatidyl acyltransfera... Lus10040492
[exp]
24.0 0.7031
AT4G08500 ARAKIN, ATMEKK1... MAPK/ERK kinase kinase 1 (.1) Lus10028038
[exp]
27.2 0.6341
AT2G29700 ATPH1 pleckstrin homologue 1 (.1) Lus10018222
[exp]
56.3 0.6042
AT3G01090 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.... Lus10035801
[exp]
65.2 0.6196
AT2G39940 COI1 CORONATINE INSENSITIVE 1, RNI-... Lus10040224
[exp]
71.8 0.5989
AT1G29220 transcriptional regulator fami... Lus10007288
[exp]
99.9 0.5384
AT5G16450 Ribonuclease E inhibitor RraA/... Lus10020212
[exp]
126.3 0.5546
AT5G24690 Protein of unknown function (D... Lus10022966
[exp]
142.4 0.5389

Lus10013409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.