Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55350 2665 / 0 EMB80, ATDEK1, DEK1, EMB1275 EMBRYO DEFECTIVE 80, embryo defective 1275, DEFECTIVE KERNEL 1, calpain-type cysteine protease family (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010313 [exp] 1427 / 0 AT1G55350 2485 / 0.0 EMBRYO DEFECTIVE 80, embryo defective 1275, DEFECTIVE KERNEL 1, calpain-type cysteine protease family (.1.2.3.4.5) Lus10010314 [exp] 528 / 2e-170 AT1G55350 674 / 0.0 EMBRYO DEFECTIVE 80, embryo defective 1275, DEFECTIVE KERNEL 1, calpain-type cysteine protease family (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G221100 [exp] 2888 / 0 AT1G55350 3113 / 0.0 EMBRYO DEFECTIVE 80, embryo defective 1275, DEFECTIVE KERNEL 1, calpain-type cysteine protease family (.1.2.3.4.5) Potri.001G003900 [exp] 2875 / 0 AT1G55350 3107 / 0.0 EMBRYO DEFECTIVE 80, embryo defective 1275, DEFECTIVE KERNEL 1, calpain-type cysteine protease family (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF01067 [flax] [poplar] Calpain_III Calpain large subunit, domain III CL0125 [flax] [poplar] Peptidase_CA PF00648 [flax] [poplar] Peptidase_C2 Calpain family cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10013411 pacid=23155070 polypeptide=Lus10013411 locus=Lus10013411.g ID=Lus10013411.BGIv1.0 annot-version=v1.0 ATGGCCGGCACCGCTCTTTTACTAGCATTCTATTCGATCATGCTTTGGTGGAGAACACAATGGCAAAGTTCAAGGGCGGTTGCTATTCTTCTTCTTCTAG CTGTTTTCTTGCTCTGTGGATATGAGTTATGTGCCGTCTATGTCACAGCTGCTATTGCCTTGGCAATCAACATGCTATTCATCTGCAGAATGGTATTTAA CGGGAATGGCCTAGATGTTGATGAATATGTACGAAGAGCATACAAGTTTGCGTATAGTGATTGTATTGAGATGGCTCCTCTGCCTAGTGTGCCCGAACCG CCTGATCCTAATGAACTATATCCAAGGCAATCAAGAAAGGCTTCTCATCTTGGACTTCTCTACCTTGGATCACTTCTTGTTCTCTTTGTCTATTCCGTGT TGTATGGTCTGACAGCAAAGGAATCACGTTGGCTCGGAGCTATCACATCGGCTGCTGTTGTAGTTCTTGATTGGAATATGGGCGCTTGCTTGTATGGGTT TAAACTTCTTCGAAGTCGTGTTGCTGCTCTTTTTGTTGCTGGAATGTCTCGGGTTTTCCTCATCTGCTTTGGAGTGGATTATTGGTATTTGGGGCATTGC ATCAGTTATGCTGTTGTTGCTACTGTGCTTTTGGGTGCTGCCGTTTCTCGCCATCTCTCAGTTACGAACCCTTCAGCAGCTAGAAGAGATGCTTTACAGA GCACAGTGATCCGGTTGAGGGAGGGCTTCCGCAAGAAGGAGCAGAATGCTTCATCCAGCTCCTCTGAGGGTTGTGGCTCAAGTGTAAAACGCAGTGGTAG TTTTGAAACAGGCCATCTTGGGAATGTTGTTGAATCCGCCAGTCAATGTACAGCACAAAGCATTTCTGAGACCAATAACTGGCATAATGTTCTTCTATGT CGAACTGCTAGTTGTCATGAGGGGATAAATAGTGATAAGAGCATGGAAAGCGGGAGGCCAAGTTTAGCATTTCGTAGCAGTTCATGCCGTCTTGCTGTCC AAGAATCTGAAGTTGGGACATCGGGTGGCCAAAGTTGTGAACCTAATAACTCTCATGTAGTTTGCTCAAGTAGTGGTCTTGATGGGCAAGGCTGCGAGTC TGGTTCGTCAACTCAGACAAATCAGCAACTTTTAGATCTAAACTTGGCTCTTTCACTCCAAGAGAGACTGAAGGACCCTAGGATTACATCTTTGCTAAAA AAGAGAGCAATGCAAGGAGATAAGGAACTCAGTTGTTTACTGCAGAATAAAGGACTTGATCCTAATTTTGCAGTGATGTTGAAAGAGAAGAACTTGGACC CAACGATCCTTGCTTTGCTACAAAGGAGTAGTTTGGATGCGGACAGGGACCATGACAGAAACACTGATATAACAGTTGTTGACTCTAACAGTGTGGACAA CAATATTCCTCATCAAATTTCCTTGTCAGAAGAACTAAGGCTTCAAGGGCTTGAGAAGTGGCTTCAGTGGTCTAGATTCATTCTTCATCATGTGGCTGGT ACTCCAGAGCGAGCATGGGTCCTATTTAGTTTCATATTCATTATTGAAACAGTTATTGTTGCAATTTTTCGACCCATGCCAATAAAAATTATAAATGCCA GACACCAGCAGTTTGCATTTGGAATTGCAGTGGTGTTGTTATCCCCCGTGGTTTGTTCAATCTTGGCTTTCCTTCAATCACTTAGGGCTGAGGGAATGGC AATGACATCCAAGCCTCGCAAGTATGGTTTTATCGCATGGTTGCTCAGTACTGGTGTTGGATTATTACTATCATTCTTGAGCAAATCATCAGTACTCCTG GGGTTGTCATTGACAGTCCCACCCATGGTGGCTTGCCTTTCTGTTACTGTGCCTATTTGGATTCACAATGGTTATCAATTTTGTGTTCCACTAGAAGAGT TGGATGGCTATGCTGAAGGGCGTTCTAGAAGGAGAAAAGAGCGTGGTGTTCTCGTATTCTGCATATTATTGTTTGCTGGATCTGTAGTAGCTCTGGGCTC AATAGTGTCTGCACAACCTTTAGAGAAGTTGCAATACGAGGGGTGGAGTAAAAACCAGAAAATGTTTGATTCCCCGTATGCATCCTTAGTTTACCTTGGC TGGGCGATGGCATCTTTTATTGCTTTAGTAGTCACTGGAGTGCTGCCCATTGTTTCATGGTTTGCGACCTACCGATTCTCCCTTTCTTCTGCTATATCTA CTGGGATATTTGCAGTTGTTCTGGTGACCTTTTCTGGTGCATCGTATATGGAGGTTGTGCAATCCAGAGATGACCAGGTTCCTACTGAGGGAGATTTTCT TGCTGCCCTCCTACCACTCATGTGCATGCCAGCATTGCTTTTACTTTGCTCGGGATTGCTTAAGTGGAAAGATGACGATTGGAGACTTTCTCGGGGAGTA TATCTATTTGTTAGCATTGGTCTTCTTCTTCTCCTTGGTGCAATATCAGTTGTTATTGCAATAGTTGAACCATGGAGTATAGGTGTGGCATTTCTTCTAG TTCTTCTCCTGATTGTTCTAGCTATTGGCGTCATACATCACTGGGCTTCCAACAATTTCTACTTAACTAGGACACAAACGTTCTTCGTTTGTTTTCTTGC TTTTCTTCTGGGCTTGGCAGCATTTCTGGTTGGATGGTTTAAAGGAAAACCTTTCGTTGGAGCTTCTGTAGGTTATTTTTCGTTCCTTTTTCTTCTTGCT GGGCGGGCATTAACGGTTCTTCTTTCACCTCCTATTGTCGTGTACTCACCTAGAGTGTTGCCTGTATATGTCTATGATGCCCATGCTGATTGTGGGAAGA ATGTCAGTGCTGCATTTCTCATGCTTTATGGCGTTGCTTTGGCTACTGAAGGCTGGGGTGTTGTTGCAAGTTTAAAAATTTATCCTCCATTTGCTGGTGC TGCTGTGTCAGCAATTACTCTTGTTGTAGCTTTCGGGTTTGCAGTCTCTCGCCCCTGCCTGACCCTCGAGATGATGGAAGATGCAGTTCATTTTCTTAGC AAGGATACTGTTGTTCAGGCTATAGCACGATCTGCAACTAAGACAAGGAATGCTTTATCTGGAACTTATTCAGCACCTCAGAGATCGGCTAGTTCAACAG CTCTTTTGGTTGGAGACCCGACTGCCTCACGTGATAAGGCAGGAAATCTTGTACTTCCCAGAGATGATGTCATGAAATTAAGGGATCGATTGAAAAATGA GGAGTTGGTTGCTGGCTCACTTTTCCGCATAATGAAGTATAAGACCTTTCGCCGTGAATCTACCAGTGATGTAGATCACAGAAGAGAAATGTGTGCACAT GCTCGGATATTAGCTTTGGAAGAGGCAATTGATACTGAGTGGGTATATATGTGGAATAGGTTTGGTGGTTATTTACTTCTTCTGTTTGGTTTGACAGCTA AGGCCGAGCGTGTACAGGACGAGGTACGCTTGAGGCTTTTTCTTGATAGCATAGGGTTCTCAGACCTGAGTGCAAAGAAAATTAAGAAGTGGATGCCAGA GGATCGCCGGCAATTTGAAATAATTCAGGAGAGCTATTTGAAAGAAAAGGAGATGGAAGAGGAACTTTTAATCCAGAGACGTGAAGAAGAGGGAAGAGGC AAAGAAAGGAGAAAGGCTCTTCTTGAGAAGGAGGAACGCAAATGGAAGGAGATTGAAGCTTCACTTATGTCTTCTATTCCTAATGCTGGAAGCAGAGAGG CAACAGCTGTGGCAGCTGCGGTGCGCGCTGTTGGAGGTGATTCTGTTTTCAGCGACTCATTTGCTCGGGAGAGGGTGTCCAGTATTGCACGAAGGATACG TACTGCTCAATTAGTGCGCCGGGCACTCCAGACGGGAATTCCTGATGCCGTTTGTGTTCTTGATGATGAACCAACCACAAGCGGTAGACATTGTGGTGAA GTCGATCCGAGTGTATGTCAAAGTCGAAAGATCACATTTTCTGTTGTGGTGATGATCCAACCAGAATCCGGCCCAGTATGTCTTTTGGGCACAGAATTTC AGAAGAAGAATTGTTGGGAAATTTTAGTTGCTGGCGCTGAACAAGGTATTGAAGCTGGACAAGTGGGGCTTAGATTGATAACTAAAGGAGAGAGGCAGAC AACTGTTGCAAAAGAATGGAGTATTGGTGCAAGTAGCATTGCTGATGGAAGGTGGCATTTTGTAACAATGACGATTGATGCTGATGTGGGTGAGGCAACT TGCTATCTAGATGGTGGATTTGATGGCATGCAGACAGGGTTGCCATTGCCTGCTGATAATAGCATCTGGGAACAAGGGACTGAAATATGGGTTGGTGTTA GACCACCAATGGATATGGATGCATTTGGAAGGTCGGATAGTGAAGGCGCCGAGTCTAAGATGCACATGATGGATGTTTTCCTTTGGGGGAAGTGCTTAAC CGATGATGACGTTGCCTCCCTTTACTCTGCCATAGGATCAACTGAGTTTGGGATGGTTGATTTTCCTGAAGATAACTCGCAATGGGCAGATTCACCCTCC AGGGTTGATGAGTGGGACAGTGATCCAGCTGATGTAGATCTATACGACAGAGATGATGTCGATTGGGATGGGCAATATTCTAGCGGAAGGAAAAGGAGGT CGGGACGTGAAGCAACGGTGGTAGATGTCGACTCTTTTACAAGGAGGTTCAGGAAGCCTAGAATCGAGACGCAAGAAGAAATTAATCAGAGAATGCTCTC ACTCGAATTGGCTGTTAAAGAAGCCCTCTTTGCCAAGGGGGAATCACATTTTACTGATCAGGAGTTCCCCCCGGATAATCAGTCGTTATATTTGGATCCA GAGAATCCGCCTTCTAAGCTACAGGTGGTCTCCAAATGGACGAGGCCTGCTGACATAGTGAAGGAAAGTCGGTTAGATGCAAACCCATGCTTATTTTCTG GACCAGCAAACCCTTCTGATGTCTGTCAGGGTCGGTTGGGTGATTGTTGGTTTCTGAGTGCTGTTGCTGTTTTAACGGAGGTCTCGAAAATATCAGAAGT CATTATTACCCCGGAATATAACGAGGAAGGAATCTACACTGTTCGCTTTTGTATCCAGGGTGAGTGGGTTCCAGTTCTTGTTGATGATTGGATTCCCTGT GAATCGCCCGGTAAACCTGCTTTTGCTACAAGTAGGAAGGGCAATGAGTTGTGGGTCTCTCTACTCGAGAAAGCCTATGCTAAGTTGCATGGCTCTTATG AAGCCTTGGAAGGTGGGCTAGTTCAGGATGCTCTTGTTGACCTTACTGGAGGCGCTGGTGAAGAGATCGACATGAGAAGTGCCCAGGCTCAGATTGATCT TGCAAGTGGGAGACTATGGTCTCAGTTGTTGCGCTTCAAACAAGAGGGCTTTCTTCTCGGGGCCGGGAGCCCCTCAGGTTCTGATGCGCACATTTCTTCC AGTGGTATCGTCCAAGGCCATGCTTACTCTTTGCTCCAGGTGAGAGAGGTTGATGGCCATAAGCTTGTTCAGATTCGCAATCCTTGGGCGAGCGAAGTTG AGTGGAATGGCCCTTGGGCAGATGACTCCCCGGAATGGACTGATAGAATGAAACATAAGCTGAAACAGATTCCACAGTCCAAAGATGGTATATTCTGGAT GTCCTGGCAAGACTTTCAGATCCACTTCAGATCAATATATGTGTGTCGAGTCTACCCCCCAGATATGCGCTATTCTGTGCATGGCCAGTGGAGAGGCTAC AGCGCTGGAGGGTGCCAGGATTATGCTTCTTGGAATCAAAATCCACAGTTCAGGCTGAGAGCCACTGGACAAGATGCATCACTTCCAATTCATGTGTTTA TTACCTTAACTCAGATATCTTGTGAAATGGTTCTGGATCCTGATCCTAAAGGCTACACGATTGTCCCCACAACCATACACCCTGGGGAAGAAGCGCCGTT TGTTCTCTCAGTTTTCACTAAGGCATCTATTGCCCTGGAGGCTTTATAA
AA sequence Show only first row Show all	>Lus10013411 pacid=23155070 polypeptide=Lus10013411 locus=Lus10013411.g ID=Lus10013411.BGIv1.0 annot-version=v1.0 MAGTALLLAFYSIMLWWRTQWQSSRAVAILLLLAVFLLCGYELCAVYVTAAIALAINMLFICRMVFNGNGLDVDEYVRRAYKFAYSDCIEMAPLPSVPEP PDPNELYPRQSRKASHLGLLYLGSLLVLFVYSVLYGLTAKESRWLGAITSAAVVVLDWNMGACLYGFKLLRSRVAALFVAGMSRVFLICFGVDYWYLGHC ISYAVVATVLLGAAVSRHLSVTNPSAARRDALQSTVIRLREGFRKKEQNASSSSSEGCGSSVKRSGSFETGHLGNVVESASQCTAQSISETNNWHNVLLC RTASCHEGINSDKSMESGRPSLAFRSSSCRLAVQESEVGTSGGQSCEPNNSHVVCSSSGLDGQGCESGSSTQTNQQLLDLNLALSLQERLKDPRITSLLK KRAMQGDKELSCLLQNKGLDPNFAVMLKEKNLDPTILALLQRSSLDADRDHDRNTDITVVDSNSVDNNIPHQISLSEELRLQGLEKWLQWSRFILHHVAG TPERAWVLFSFIFIIETVIVAIFRPMPIKIINARHQQFAFGIAVVLLSPVVCSILAFLQSLRAEGMAMTSKPRKYGFIAWLLSTGVGLLLSFLSKSSVLL GLSLTVPPMVACLSVTVPIWIHNGYQFCVPLEELDGYAEGRSRRRKERGVLVFCILLFAGSVVALGSIVSAQPLEKLQYEGWSKNQKMFDSPYASLVYLG WAMASFIALVVTGVLPIVSWFATYRFSLSSAISTGIFAVVLVTFSGASYMEVVQSRDDQVPTEGDFLAALLPLMCMPALLLLCSGLLKWKDDDWRLSRGV YLFVSIGLLLLLGAISVVIAIVEPWSIGVAFLLVLLLIVLAIGVIHHWASNNFYLTRTQTFFVCFLAFLLGLAAFLVGWFKGKPFVGASVGYFSFLFLLA GRALTVLLSPPIVVYSPRVLPVYVYDAHADCGKNVSAAFLMLYGVALATEGWGVVASLKIYPPFAGAAVSAITLVVAFGFAVSRPCLTLEMMEDAVHFLS KDTVVQAIARSATKTRNALSGTYSAPQRSASSTALLVGDPTASRDKAGNLVLPRDDVMKLRDRLKNEELVAGSLFRIMKYKTFRRESTSDVDHRREMCAH ARILALEEAIDTEWVYMWNRFGGYLLLLFGLTAKAERVQDEVRLRLFLDSIGFSDLSAKKIKKWMPEDRRQFEIIQESYLKEKEMEEELLIQRREEEGRG KERRKALLEKEERKWKEIEASLMSSIPNAGSREATAVAAAVRAVGGDSVFSDSFARERVSSIARRIRTAQLVRRALQTGIPDAVCVLDDEPTTSGRHCGE VDPSVCQSRKITFSVVVMIQPESGPVCLLGTEFQKKNCWEILVAGAEQGIEAGQVGLRLITKGERQTTVAKEWSIGASSIADGRWHFVTMTIDADVGEAT CYLDGGFDGMQTGLPLPADNSIWEQGTEIWVGVRPPMDMDAFGRSDSEGAESKMHMMDVFLWGKCLTDDDVASLYSAIGSTEFGMVDFPEDNSQWADSPS RVDEWDSDPADVDLYDRDDVDWDGQYSSGRKRRSGREATVVDVDSFTRRFRKPRIETQEEINQRMLSLELAVKEALFAKGESHFTDQEFPPDNQSLYLDP ENPPSKLQVVSKWTRPADIVKESRLDANPCLFSGPANPSDVCQGRLGDCWFLSAVAVLTEVSKISEVIITPEYNEEGIYTVRFCIQGEWVPVLVDDWIPC ESPGKPAFATSRKGNELWVSLLEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDMRSAQAQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDAHISS SGIVQGHAYSLLQVREVDGHKLVQIRNPWASEVEWNGPWADDSPEWTDRMKHKLKQIPQSKDGIFWMSWQDFQIHFRSIYVCRVYPPDMRYSVHGQWRGY SAGGCQDYASWNQNPQFRLRATGQDASLPIHVFITLTQISCEMVLDPDPKGYTIVPTTIHPGEEAPFVLSVFTKASIALEAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10013411 [exp]	0	1
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010313 [exp]	1.0	0.9752
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	2.8	0.9614
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	3.5	0.9494
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10010087 [exp]	3.5	0.9468
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010314 [exp]	3.9	0.9518
AT4G03090			sequence-specific DNA binding;...		Lus10024745 [exp]	5.5	0.9426
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10023864 [exp]	10.6	0.9401
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006377 [exp]	10.7	0.9353
AT3G61690			nucleotidyltransferases (.1)		Lus10004019 [exp]	13.2	0.9346
AT3G61690			nucleotidyltransferases (.1)		Lus10030266 [exp]	13.9	0.9429

Compare expression of checked genes

Lus10013411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.