Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55340 165 / 1e-52 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G03880 104 / 1e-28 Protein of unknown function (DUF1639) (.1) AT4G20300 50 / 1e-07 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G60410 40 / 0.0002 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010312 [exp] 288 / 3e-101 AT1G55340 254 / 1e-86 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010650 [exp] 61 / 3e-12 AT1G55340 148 / 3e-46 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10038379 [exp] 54 / 3e-09 AT4G20300 188 / 1e-58 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10036240 [exp] 54 / 4e-09 AT4G20300 217 / 3e-67 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10035144 [exp] 40 / 0.0003 AT1G25370 87 / 2e-20 Protein of unknown function (DUF1639) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G004000 [exp] 195 / 2e-64 AT1G55340 268 / 4e-92 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G221000 [exp] 189 / 4e-62 AT1G55340 261 / 3e-89 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.019G035300 [exp] 142 / 2e-43 AT1G55340 232 / 9e-78 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.013G057600 [exp] 135 / 1e-40 AT1G55340 212 / 1e-69 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G157500 [exp] 52 / 2e-08 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.001G073400 [exp] 52 / 2e-08 AT4G20300 226 / 3e-71 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.018G059200 [exp] 45 / 6e-06 AT1G55340 133 / 3e-38 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.006G233100 [exp] 42 / 3e-05 AT1G55340 130 / 9e-37 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.010G122700 [exp] 39 / 0.0005 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [flax] [poplar] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Lus10013412 pacid=23155092 polypeptide=Lus10013412 locus=Lus10013412.g ID=Lus10013412.BGIv1.0 annot-version=v1.0 ATGGACAAGGAGAAAAAGAATTCAGAGAATGATTTTGTGTTACAATGGGGAACCAAAAAGAGGCTCAGATGCGTGAAATTGAAGAAAAATCAAAACTTGA CCAACAGTTCAAGACCAACTGATTCTTTCCCCAAGAAGAGGCTCACTTCTGCTGTCGTCTCTTCAAAGAAAGATTCTCCTTCTCGTTTTATCAAGAACTC CGATATGTTAGCAAGCAGGAGGAAAGTATCGTCACCGGAGAAAGAAGACCGGTACTACACAACTAGGGGATCAATGGGACTGGATGAAAGCAGTAAGCTT TTATTCGATAGTGTGAAGTTGGAAGACAAAGGTCATGCCTGGCCAAAATTGTTCATCTCGTTGTCAAATAAAGAAAAAGAGGAGGATTTCATGGCAATGA AAGGATGTAAACCATCACAGAGGCCTAAGAAAAGCGCCTAG
AA sequence Show only first row Show all	>Lus10013412 pacid=23155092 polypeptide=Lus10013412 locus=Lus10013412.g ID=Lus10013412.BGIv1.0 annot-version=v1.0 MDKEKKNSENDFVLQWGTKKRLRCVKLKKNQNLTNSSRPTDSFPKKRLTSAVVSSKKDSPSRFIKNSDMLASRRKVSSPEKEDRYYTTRGSMGLDESSKL LFDSVKLEDKGHAWPKLFISLSNKEKEEDFMAMKGCKPSQRPKKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55340			Protein of unknown function (D...		Lus10013412 [exp]	0	1
AT3G12300			unknown protein		Lus10005383 [exp]	1.4	0.9607
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	1.7	0.9670
AT2G44270		ROL5	repressor of lrx1 (.1.2)		Lus10009739 [exp]	2.2	0.9430
AT4G26310			elongation factor P (EF-P) fam...		Lus10007884 [exp]	3.6	0.9295
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	4.2	0.9522
AT1G30140			unknown protein		Lus10024751 [exp]	6.3	0.9453
AT5G26610			D111/G-patch domain-containing...		Lus10031446 [exp]	6.5	0.9387
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	6.9	0.9363
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	7.3	0.9333
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	8.1	0.9326

Compare expression of checked genes

Lus10013412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.