Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26260 704 / 0 AT3BETAHSD/D2 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) AT1G47290 583 / 0 AT3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) AT2G43420 391 / 7e-130 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) AT2G33630 160 / 5e-43 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G33360 81 / 2e-16 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G78570 66 / 5e-11 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT1G53500 66 / 6e-11 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT2G45400 62 / 4e-10 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G14790 62 / 6e-10 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G09510 59 / 3e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010311 [exp] 1001 / 0 AT2G26260 664 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10000358 [exp] 423 / 3e-147 AT1G47290 298 / 3e-101 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) Lus10013202 [exp] 176 / 1e-48 AT2G33630 714 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10030720 [exp] 172 / 2e-47 AT2G33630 720 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021740 [exp] 89 / 7e-19 AT4G33360 551 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10004797 [exp] 82 / 3e-18 AT2G43420 110 / 1e-28 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Lus10020776 [exp] 67 / 2e-11 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10007355 [exp] 65 / 9e-11 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10041651 [exp] 63 / 2e-10 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218400 [exp] 808 / 0 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Potri.007G131200 [exp] 379 / 2e-126 AT2G43420 501 / 3e-174 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Potri.002G005100 [exp] 172 / 2e-47 AT2G33630 738 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G127400 [exp] 84 / 3e-17 AT4G33360 494 / 4e-177 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G127500 [exp] 74 / 3e-14 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.011G103700 [exp] 65 / 9e-11 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 64 / 2e-10 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G272700 [exp] 64 / 2e-10 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.003G181400 [exp] 59 / 3e-09 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.009G057600 [exp] 59 / 4e-09 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10013413 pacid=23155087 polypeptide=Lus10013413 locus=Lus10013413.g ID=Lus10013413.BGIv1.0 annot-version=v1.0 ATGTCCGGGGACGATGGGGCGAGATTGTGCGTGGTCACCGGCGGCAGGGGCTTCGCCGCCCGGCATTTGATTGAAATGCTCATCCGATTGGACAAGTTTC TCGTTCGGATCGCTGATTTGGCTCCCGCAATCGAGCTCAGCCCCGATGAAGTAGACGGAGACCTCGCCCGTGCATTGGAATCCGGCCGAGCTACCTATGT TTCCATGGATCTCCGCAATAAACCTCAAGTAATCAAAGCTCTTGAAGGAGCTGAAGTCGTCTTCCACATGGCGGCTCCGCATTCTGGTATCAATAACTAC GAACTCCACTACTCAGTCAATGTCCAAGGAACGAAGAATGTAATTGATGCTTGCGTGGAGCTTCAAGTGAAGATCCTGATCTACACTAGCTCTGCTAGTG TAGTATTTGATGGGATTAATCCAATTCACAATGGAGACGAATCACTGCCTTATCCGCCTAAGCCTCTTGATTCATACTCTGCAACTAAAGCAGAAGCTGA GGCTGCTATCCTCAAGGCTAATGGTACCAATGGGCTTCTTACGTGCTCCTTACGTCCTAGTAGCATATTTGGTCCTGGTGATAAATTGTTTGTTCCTTCT CTTGCTGAGAATGGAAAGGCTGGGAAGTCCAAGTTCTTAATCGGTGATGGCAACAACGTCTATGACTTCACATATGTTGAAAACGTTGCACATGCTCACA TCTGCGCTGAACAAACTTTGTCATCAGCAAAGGAAATTGCCGATAAAGCTTCAGGGCAGGCGTATTTTATAACCAACATGGAACCTATGAAGTTCTGGGA GTTTGCTGGAAATGTTTGGGCAGGTCTTGGTTACGAGAGGCCGAGGGTAAAGGTTCCTGCTGCAATAGTTCTGCCAATAGCTTATGCAATTCAGTGGGCA TATAATATACTAGGGCCATATGGGATGAAGGTTCCAGTGCTGATTCCTTCGAGAGTTAGACTCCTTTCTGGCAACAGATCATTTAGTTGTGCAAAAGCTC ATGAGCGCCTTGGCTATACAACAATTGTATCTCTTGAGGAAGGTTTGAAAAGAACTCTCGAGTCATTTTCACATCTTAGTGCTGACAATCAACCTAAAAG AGAAGGGCCGTCTAAGGCCTCACTATATCTTGGAAATGGAAAGGTTGCTGAGACACTACTTTGGAAGGACACAAGGAAGTCGCTAGCAGTGTTGCTAGTT CTCATTGGAATCTATTACAGTTTTGTTTTGTCGGACACTACCATTATTACTGCGACCTCAAAGCTTCTCTTGATGACATCAATCTTTCTATTCGTCCATG GCAGATTACCGGAGAAAATATTCGGGTATAATATTGAAAAGATCCGTCCATCGCATTTTTACTGCACCGAGAAGAAGTCTTACCAAGTTGCCCATGTATT GGCTTCTATCTGGAATGCCAGCATTGATGTTTTGGGAACTCTTTGCAAAGGGAACGACTGGGTGCTCTTTGGGAAGGTGGTCTCCTCGCTGTTGATTATT GGCATCATAGGAACCATTTCACTTCACTCGTTGTTTGTGATAGGAATCCCCTTAGCATTCGTAGGCTTCTACTTGTACGAAAGGAACGAAGAAGCAATTG ATGGTATGGTTTCAGATGCTCTATCTTATGGGTGTAAATTGAAATCTCAAATGATGCAGAAAGTCAGTGGTCCGAAGAAGACCAACTGA
AA sequence Show only first row Show all	>Lus10013413 pacid=23155087 polypeptide=Lus10013413 locus=Lus10013413.g ID=Lus10013413.BGIv1.0 annot-version=v1.0 MSGDDGARLCVVTGGRGFAARHLIEMLIRLDKFLVRIADLAPAIELSPDEVDGDLARALESGRATYVSMDLRNKPQVIKALEGAEVVFHMAAPHSGINNY ELHYSVNVQGTKNVIDACVELQVKILIYTSSASVVFDGINPIHNGDESLPYPPKPLDSYSATKAEAEAAILKANGTNGLLTCSLRPSSIFGPGDKLFVPS LAENGKAGKSKFLIGDGNNVYDFTYVENVAHAHICAEQTLSSAKEIADKASGQAYFITNMEPMKFWEFAGNVWAGLGYERPRVKVPAAIVLPIAYAIQWA YNILGPYGMKVPVLIPSRVRLLSGNRSFSCAKAHERLGYTTIVSLEEGLKRTLESFSHLSADNQPKREGPSKASLYLGNGKVAETLLWKDTRKSLAVLLV LIGIYYSFVLSDTTIITATSKLLLMTSIFLFVHGRLPEKIFGYNIEKIRPSHFYCTEKKSYQVAHVLASIWNASIDVLGTLCKGNDWVLFGKVVSSLLII GIIGTISLHSLFVIGIPLAFVGFYLYERNEEAIDGMVSDALSYGCKLKSQMMQKVSGPKKTN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Lus10013413 [exp]	0	1
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10000646 [exp]	3.5	0.8759
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10017851 [exp]	4.5	0.8590
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10022211 [exp]	15.4	0.7771
AT1G24160			unknown protein		Lus10003514 [exp]	16.9	0.8454
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10041423 [exp]	20.2	0.8622
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	20.3	0.8677
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	20.6	0.8567
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030899 [exp]	24.7	0.8532
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	31.4	0.8436
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10023610 [exp]	31.6	0.8472

Compare expression of checked genes

Lus10013413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.