Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40940 872 / 0 ERS1 ethylene response sensor 1 (.1) AT1G66340 833 / 0 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G23150 357 / 3e-113 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G04580 346 / 3e-109 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT1G04310 298 / 3e-92 ERS2 ethylene response sensor 2 (.1) AT5G10720 113 / 7e-26 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G17820 111 / 5e-25 AHK1, ATHK1 histidine kinase 1 (.1) AT1G27320 110 / 1e-24 AHK3 histidine kinase 3 (.1) AT2G01830 95 / 6e-20 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G35750 92 / 5e-19 AHK2 histidine kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010310 [exp] 1245 / 0 AT2G40940 904 / 0.0 ethylene response sensor 1 (.1) Lus10007357 [exp] 865 / 0 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10020778 [exp] 856 / 0 AT1G66340 1220 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10031382 [exp] 853 / 0 AT1G66340 1206 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10022203 [exp] 388 / 7e-125 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021212 [exp] 386 / 4e-124 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021880 [exp] 384 / 2e-123 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10041159 [exp] 380 / 4e-122 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10006574 [exp] 363 / 4e-115 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201500 [exp] 1008 / 0 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.001G204200 [exp] 868 / 0 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 865 / 0 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.008G164400 [exp] 386 / 2e-124 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.010G074300 [exp] 384 / 2e-123 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.019G014300 [exp] 381 / 2e-122 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.013G044100 [exp] 379 / 2e-121 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.003G171000 [exp] 103 / 8e-23 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 103 / 9e-23 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.005G111700 [exp] 102 / 4e-22 AT2G17820 1435 / 0.0 histidine kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain
Representative CDS sequence Show only first row Show all	>Lus10013415 pacid=23155168 polypeptide=Lus10013415 locus=Lus10013415.g ID=Lus10013415.BGIv1.0 annot-version=v1.0 ATGGAGTCCTGCGATTGCATCGACACACAATTTCCACACGACGAACTCCTGGTGAAATACCAGTACATCTCAGACGTACTAATCGCAGCCGCATACTTCT CCATCCCAGTAGAACTCATCTACTTCGTCCAGAAATCAGCATTCTTCCCCTACAGATGGGTCCTAATGCAATTCGGCGCCTTCATCGTCCTCTGCGGCGC AACACACTTCATAAACCTCTGGACTTTCTACGTCCACTCCAAAACCGTTGCCATAGTAATGACAATCGCCAAGATGTCCTGCGCGATAGTCTCATGCGCC ACCGCATTGATGCTCGTCCACATTATCCCAGACCTGCTGGGGGTCAAGACTCGGGAGCTTTTCCTCAAGAACAAGGCGGAAGAGCTGGACCGGGAAATGG GGTTGATTCTTACTCAGGAAGAAACCGGGAGACACGTCAGGATGCTGACTCACGAGATTCGAAGCACGTTGGACCGGCATACTATATTGCGGACCACGCT TGTCGAGCTTGGGAGGACGTTGGGGCTCGAAGAGTGTGCTTTGTGGATGCCGTCGAGGTCCGGGTCGGAGCTCCAGCTTTCGCATACGTTGAACTATAAG ATTCAAGTCGGGTCCAGTGTTCAGATTAACAATTCGACGGTTAGTGACGTGTTTAATAGTGTGAGGGCGATGAGGATTCCGCATAACTGTCCGTTGGCTA GGAATATTAGGCCGCTGGTGGGGAAGTATCAGCCGCCGGAAGTCGTTGCTGTGCGTGTTCCTTTGCTTCATCTTTCTGATTTTCGGATTAATGATTGGCC GGAATTGTCTGCCAAGAGCTATGCGGTGATGGTGCTCATTCTTCCGACGGATACTGCGAGGAAATGGCGCGATCATGAGCTGGAACTTGTTGAAGTTGTT GCTGATCAGGTAGCAGTTGCTCTATCACACGCTGCTATACTCGAAGAATCTATGCGAGCACGCGATCAGCTCATGGAGCAAAACGTCGCTCTAAAATCAG CTCGTCAGGAAGCAGAGCTAGCAATCCATGCCCGCAACGATTTCCTGGCTGTGATGAACCATGAGATGAGGACACCAATGCATGCAATCATTGCACTATC TTCGCTTCTTCTGGAGACAGAGCTGAGTCCTGAACAAAGAGCAATGTTGGAGACCATACTAAAGAGTAGTAACTTATTAGCAAGACTCACTAATGATGTT CTAGACCTTTCTAGGCTTGAGGATGGTAGCCTGGAGTTGGATACCGGTCTGTTTGACCTTCATGAAGTCTTCAAGGAGGCTCTTCATCTGATAAAGCCTA TTGCTGCTGTGAAGAAACTGTCCATGACTTTGTTCATGGCGCCAGACTTGCCTGGTTATGCTGTTGGCGACGAGAAGCGGCTTCTGCAAACGATTCTGAA CATTGCTGGTAATGCTGTCAAGTTTACTAAAGACGGTCACGTCTCTCTCATGGCTTCGGTTGCGAAAACAGATTCATTGAGAGACTGGCGGCCGCCTGAG TTTTATCCCATGTCAAGTGATGGCCACTTCTACCTACGCGTGCAGGTGACAGATTCAGGCAGTGGTGTTTCCCCACAAGATATACCTTCACTGTTTGTGA AATTCGCTCAGCCACGAAGCGGGTCTAGCCGACCTAACAGTGGCAACGGACTTGGTCTCGCCATTTGTAAGAGGTTTGTGAACCTGATGGGAGGCCACAT ATGGTTGGAGAGTGAAGGGCTGAATAAAGGCTGCAAGGCCATATTCATAGTGAAGCTTGGTAATGCATCAGCAGATCATGGAACTTCAAATGCAGTAACC TCGCAGCAGCATCAGCAGCAGACAGCGTTGAGAAACCACGCGAGTGCAGGGCACATCGAGCATCATAAGCCGGTGTTTCGAGACATGGATGGCTCTTCTG GCCACCGGTACCAGAGAAGCCTTTGA
AA sequence Show only first row Show all	>Lus10013415 pacid=23155168 polypeptide=Lus10013415 locus=Lus10013415.g ID=Lus10013415.BGIv1.0 annot-version=v1.0 MESCDCIDTQFPHDELLVKYQYISDVLIAAAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFYVHSKTVAIVMTIAKMSCAIVSCA TALMLVHIIPDLLGVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILRTTLVELGRTLGLEECALWMPSRSGSELQLSHTLNYK IQVGSSVQINNSTVSDVFNSVRAMRIPHNCPLARNIRPLVGKYQPPEVVAVRVPLLHLSDFRINDWPELSAKSYAVMVLILPTDTARKWRDHELELVEVV ADQVAVALSHAAILEESMRARDQLMEQNVALKSARQEAELAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELSPEQRAMLETILKSSNLLARLTNDV LDLSRLEDGSLELDTGLFDLHEVFKEALHLIKPIAAVKKLSMTLFMAPDLPGYAVGDEKRLLQTILNIAGNAVKFTKDGHVSLMASVAKTDSLRDWRPPE FYPMSSDGHFYLRVQVTDSGSGVSPQDIPSLFVKFAQPRSGSSRPNSGNGLGLAICKRFVNLMGGHIWLESEGLNKGCKAIFIVKLGNASADHGTSNAVT SQQHQQQTALRNHASAGHIEHHKPVFRDMDGSSGHRYQRSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10013415 [exp]	0	1
AT3G17130			Plant invertase/pectin methyle...		Lus10002739 [exp]	1.4	0.8851
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002165 [exp]	2.0	0.8821
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10023087 [exp]	4.7	0.8251
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10021154 [exp]	5.5	0.8589
AT4G09670			Oxidoreductase family protein ...		Lus10013633 [exp]	6.0	0.8811
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10029221 [exp]	6.6	0.8648
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	7.0	0.8442
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	8.8	0.8553
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10030102 [exp]	12.6	0.8349
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021212 [exp]	15.6	0.7978

Compare expression of checked genes

Lus10013415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.