Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02810 379 / 8e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 363 / 2e-119 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 358 / 6e-118 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 307 / 6e-102 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT2G45220 308 / 7e-99 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04970 311 / 1e-98 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 300 / 4e-95 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 295 / 1e-93 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 290 / 7e-92 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 291 / 1e-91 ATPMEPCRF pectin methylesterase PCR fragment F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010309 [exp] 746 / 0 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 328 / 4e-106 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 319 / 6e-103 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 315 / 3e-102 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 311 / 9e-100 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 311 / 6e-99 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031470 [exp] 307 / 5e-98 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008937 [exp] 305 / 1e-96 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10028536 [exp] 292 / 1e-96 AT3G60730 322 / 6e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127000 [exp] 406 / 2e-136 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202600 [exp] 396 / 1e-132 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022800 [exp] 358 / 3e-117 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 340 / 9e-111 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 334 / 6e-109 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 327 / 3e-106 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 327 / 3e-106 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 326 / 6e-106 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247700 [exp] 320 / 5e-103 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.008G011100 [exp] 319 / 3e-102 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10013416 pacid=23155151 polypeptide=Lus10013416 locus=Lus10013416.g ID=Lus10013416.BGIv1.0 annot-version=v1.0 ATGACTTCAAAATTACTCTCATCTCAAGCCCCACTTGTTGTTCTTCTCCTCCTCCTCCTCTTCACAATCTCTCCATCTTTGGCAGACTCTCCTGAAGCCA TTTGCAGGTCGACCCCGGACCCTTCCTATTGCAAATCGGTCCTCCCCGGCAACAACCAATCCGCCAACGCCTACGACTACACCCGATTCTCAGTCCGCAA GTCCATCTCCGAAGCCAACAAGTTCCTCAAACTGGTCGAGTCCTACCAATCCCCTCGCCGCAGGTCCTCTCTGTCCGCCAGCGCAGTTCGCGCACTGGAG GATTGCCATTTCCTGGCCAATCTCAACATCGAATTCTTGTCAACTTCGCTTCAGAATGTCGCCACGACCACGAACGAGACGCTCCCCGCCTCCTCGGTCG ATAGCGTCCAGACGTTCCTCAGCGCCATCTTGACCAACCAGCAGACCTGCCTGGACGGTCTGAGGACCGCGTCCTCCTCTTGGGACGACCAGCTCACCCG CCCTCTCTCGAGCGATACCAAACTGTACTCAGTCTCCCTGGCATTGTTCGCAAAGACATGGAAGCACAAGGCCAGGAAATTGAAAAAAGGACCGAAAGTT GCACGCTCGTTGACAAGCGTGCAACCCCCTTCCTCCTCCTTTCATAACGGGAGAGTACTGCCCCACTGGACTCGGAAGATTTTCGAGTCCATAGGGAGGA GGAACCTCTTGCAAACCGTGAATAATGGGACTAGTAACGTGTTGGTGAGCAATACGGTCGTGGTGAACCAGAACGGGACCGATTCCGAAGAACAAGAGAT ACAATCATGCAAATCACACATTAACAAACGTTTCACATGTTCTGCCTCTTTTGCAGCGGTGGTGTCACCAAACTTCGTAGCGGTGAACATAACCATCCGA AACACGGCCGGTGCTGTCAAGCATCAAGCGGTAGCCCTTCGAAGCGGAGGCGATTTCTCCACGTTCTACCAATGCAGCTTTGAGGGCTACCAAGACACGT TGTACACGCATTCCCTGCGACAATTTTACCGGGAATGTGACATTTACGGCACAGTCGATTTCATCTTCGGAAACGCAGCTGTCGTCCTCCAGAACTGCAA CATCTACCCTAGACTTCCAATGAGTGGGCAGTTCAACGCCATCACGGCGCAGGGCAGAACGGATCCTAATCAGAACACGGGTACCTCCATCCACAATTGT AACATCAGGGCCGCCCCAGATCTTGCCGCGTTGGGGAATTCCTCCACCGTCAACACTTACCTGGGACGGCCCTGGAAGGAGTACTCCAGGACGGTGTACC TGCAGACTTTTATGGACGGGTTGATAAATCCTGCCGGGTGGCGGGAGTGGGATGGGCAGTTTGCGCTCGCCACGCTGTACTACGCGGAGTACGAGAATAG TGGGCCGGGGTCGAACACGAGTGCCAGGGTGACGTGGCCAGGTTACACGGTGATCACGAATGAGACGGACGCATCCAATTTTACTGTGTCCGGGTTTTTA CTGGGGAATGATTGGATTCCGAAGACTGGAGTTTCTTACACTGCTGATTTGATTTGA
AA sequence Show only first row Show all	>Lus10013416 pacid=23155151 polypeptide=Lus10013416 locus=Lus10013416.g ID=Lus10013416.BGIv1.0 annot-version=v1.0 MTSKLLSSQAPLVVLLLLLLFTISPSLADSPEAICRSTPDPSYCKSVLPGNNQSANAYDYTRFSVRKSISEANKFLKLVESYQSPRRRSSLSASAVRALE DCHFLANLNIEFLSTSLQNVATTTNETLPASSVDSVQTFLSAILTNQQTCLDGLRTASSSWDDQLTRPLSSDTKLYSVSLALFAKTWKHKARKLKKGPKV ARSLTSVQPPSSSFHNGRVLPHWTRKIFESIGRRNLLQTVNNGTSNVLVSNTVVVNQNGTDSEEQEIQSCKSHINKRFTCSASFAAVVSPNFVAVNITIR NTAGAVKHQAVALRSGGDFSTFYQCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNC NIRAAPDLAALGNSSTVNTYLGRPWKEYSRTVYLQTFMDGLINPAGWREWDGQFALATLYYAEYENSGPGSNTSARVTWPGYTVITNETDASNFTVSGFL LGNDWIPKTGVSYTADLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	0	1
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	1.0	0.8267
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	3.5	0.7691
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10015573 [exp]	7.9	0.7414
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	8.2	0.7709
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010821 [exp]	10.5	0.7323
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008600 [exp]	11.7	0.7456
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10010804 [exp]	14.3	0.7150
AT4G03230			S-locus lectin protein kinase ...		Lus10039725 [exp]	15.5	0.7455
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10006925 [exp]	16.0	0.6846
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008598 [exp]	16.1	0.7185

Compare expression of checked genes

Lus10013416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.