Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02280 1162 / 0 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 646 / 0 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT5G20830 595 / 0 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT3G43190 585 / 0 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT1G73370 528 / 2e-176 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 526 / 4e-176 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G10120 117 / 1e-26 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G11110 115 / 3e-26 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT1G04920 102 / 6e-22 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G20280 100 / 3e-21 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012454 [exp] 947 / 0 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10010308 [exp] 739 / 0 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10001468 [exp] 708 / 0 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 583 / 0 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10041979 [exp] 521 / 8e-173 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 513 / 4e-169 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10020791 [exp] 489 / 7e-162 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10007372 [exp] 488 / 9e-162 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10008205 [exp] 442 / 1e-150 AT4G02280 466 / 2e-159 sucrose synthase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202300 [exp] 1197 / 0 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.015G029100 [exp] 780 / 0 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.004G081300 [exp] 773 / 0 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.006G136700 [exp] 600 / 0 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G063500 [exp] 588 / 0 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.012G037200 [exp] 549 / 0 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 515 / 4e-172 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.006G064300 [exp] 110 / 1e-24 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G025100 [exp] 109 / 2e-24 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.T124307 [exp] 108 / 7e-24 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF00862 [flax] [poplar] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Lus10013417 pacid=23155064 polypeptide=Lus10013417 locus=Lus10013417.g ID=Lus10013417.BGIv1.0 annot-version=v1.0 ATGGCGAACCCTAAGCTAGGACGGAATCTCAGCATCAGGGATCGCGTCGAGGACACTCTCTCTGCTCACCGTAACCAGCTCGTGTCCCTCCTTTCCAGGT ACGTGGAGCAAGGAAAAGGAATTCTGCAGCCACATAACTTGCTCGATGAGCTCGACAACGTCATCTGCGACGAACAAGATAGGGAGACGCTTCGTAATGG CCCTTTCAGTGAAGTCCTTAAATCTGCTATGGAAGCGATAGTTCTACCTCCATTTGTGGCAATTGCCGTTCGTCCAAGGCCTGGTGTTTGGGAATACGTG CGGGTTAATGTTCATGAGCTCAGTGTGGATCAATTGACTATCTCTGAGTACCTTCAGTTCAAGGAAGAATTGGTGGACGGGCAGTCAAATGATCCGTATG TTCTTGAGCTGGATTTGGAGCCGTTCAATGCTAGTTTCCCTCGACCTAACCGTTCTTCATCGATTGGAAATGGAGTTCAGTTCCTCAATCGTCATCTATC CTCAAACATGTTCCGCAATAAGGACTCGTTGGAACCTCTGCTTGAATTCCTGCGGGCACACAAGTACAAAGGGCATGCTTTAATGTTGAATGATAGGATA CAAAGTGTATCAAGACTGCAATCTGCTCTAGCTAAGGCAGAAGATTACATCTCCAAGCTCCCACTGGACACTCCATACGCTGAATTCGAATATGCGATAC AAGGCATGGGCTTCGAGCGAGGCTGGGGTGACACTGCAGAACGAACTATGGAGATGATGCATCTTCTCTTAGACATCTTGCAGGCTCCTGATCCTTCAAC TTTAGAGACATTCCTGGGACGAGTACCTATGGTATTCAACGTTGTTATCTTGTCTCCGCACGGATACTTTGGGCAGGCAAATGTTTTAGGCTTGCCAGAC ACTGGTGGTCAGATTGTGTATATACTGGATCAAGTGCGTGCTTTGGAGCATGAAATGCTTCTTAGGATAAAGAAGCAAGGATTGGATTTCAAGCCAAGAA TTCTCGTTGTGACCAGGTTAATACCTGATGCAAAAGGTACTACGTGTAATCAGCGTTTGGAAAGAATCAGTGGAACAGAGTATACTCATATTCTCAGATG CACCATCGCCCATGCATTGGAGAAAACAAAATATCCAAATTCAGATCTCTACTGGAAGAAGTTTGATGAGAAATATCACTTCTCTTGTCAATTCACTGCT GATCTTTTAGCCATGAATAATGCAGACTTCATTATTACCAGTACTTACCAAGAGATTGCAGGAACGAAAACTACTGTGGGACAGTATGAAAGCCACACGG CCTTCACCCTTCCCGGACTCTACAGAGTTGTTCATGGTATTGATGTCTTTGATCCCAAGTTCAACATTGTATCTCCTGGAGCTGATATGTCGATCTACTT CCCGTTCTACGAGAAGCAGAAAAGACTCACGTCTCTGCATGCCTCGCTCGAGAAGATGTTGTATGATCCGGAGCAAAATGATGAGTGGATCGGTACACTA GATGATCGATCGAAGCCCATACTCTTTTCCATGGCAAGGCTGGACCATGTTAAAAATATAACCGGCTTGGTTGAGTGCTATTGCAAGAATACCAAACTGA GGGAGCTCGTGAACCTAGTCGTGGTTGCTGGCTACATCGATGCCAGCAAGTCGAAAGACAGGGAAGAGATTGAAGAAATCGAAAAGATGCATAGTCTTAT GAAGGAGTACGGCTTGAACGGACAGTTCCGTTGGATCACATCACAAACAAATCGAGCTAGAAATGGCGAGCTCTACCGCTACATAGCAGACACAAGAGGA GCTTTTGTACAGCCTGCTTTCTACGAGGCTTTTGGACTCACAGTTGTGGAGGCAATGACCTGTGGCCTTCCAACTTTCGCCACTCTCCACGGCGGTCCTG CCGAGATTATTGAGCATGGAGTTTCCGGCTTCCATATCGATCCGTATCACCCTGATCAGACTGCTGCACAAATTGCGGATTTCTTTGAACTCTGCAAAGA AGATCCTAGCTACTGGAACAAAATCTCGGACGGAGGACTCCAACGAATTTACGACAGGTATACATGGAAGATCTATTCGGAAAGGCTAATGACATTGGCC GGGGTATACGGTTTCTGGAAGCACGTCTCCAAACTGGAACGCCGCGAGACCCGACGATATCTCGAGATGTTCTACATTCTCAAGTTCCGCGACCTGACAA AGACTGTTCCTTTGGCGATTGACGACCATCATTAA
AA sequence Show only first row Show all	>Lus10013417 pacid=23155064 polypeptide=Lus10013417 locus=Lus10013417.g ID=Lus10013417.BGIv1.0 annot-version=v1.0 MANPKLGRNLSIRDRVEDTLSAHRNQLVSLLSRYVEQGKGILQPHNLLDELDNVICDEQDRETLRNGPFSEVLKSAMEAIVLPPFVAIAVRPRPGVWEYV RVNVHELSVDQLTISEYLQFKEELVDGQSNDPYVLELDLEPFNASFPRPNRSSSIGNGVQFLNRHLSSNMFRNKDSLEPLLEFLRAHKYKGHALMLNDRI QSVSRLQSALAKAEDYISKLPLDTPYAEFEYAIQGMGFERGWGDTAERTMEMMHLLLDILQAPDPSTLETFLGRVPMVFNVVILSPHGYFGQANVLGLPD TGGQIVYILDQVRALEHEMLLRIKKQGLDFKPRILVVTRLIPDAKGTTCNQRLERISGTEYTHILRCTIAHALEKTKYPNSDLYWKKFDEKYHFSCQFTA DLLAMNNADFIITSTYQEIAGTKTTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPFYEKQKRLTSLHASLEKMLYDPEQNDEWIGTL DDRSKPILFSMARLDHVKNITGLVECYCKNTKLRELVNLVVVAGYIDASKSKDREEIEEIEKMHSLMKEYGLNGQFRWITSQTNRARNGELYRYIADTRG AFVQPAFYEAFGLTVVEAMTCGLPTFATLHGGPAEIIEHGVSGFHIDPYHPDQTAAQIADFFELCKEDPSYWNKISDGGLQRIYDRYTWKIYSERLMTLA GVYGFWKHVSKLERRETRRYLEMFYILKFRDLTKTVPLAIDDHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10013417 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Lus10036343 [exp]	2.8	0.9595
AT3G52710			unknown protein		Lus10021354 [exp]	4.1	0.9390
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10026949 [exp]	4.6	0.9535
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10038049 [exp]	8.5	0.9534
					Lus10012705 [exp]	11.8	0.9430
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002767 [exp]	15.3	0.9353
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10020714 [exp]	18.0	0.9489
AT1G06000			UDP-Glycosyltransferase superf...		Lus10007971 [exp]	18.3	0.9576
AT1G15170			MATE efflux family protein (.1...		Lus10018134 [exp]	18.7	0.9502
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030805 [exp]	19.4	0.9510

Compare expression of checked genes

Lus10013417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.