Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02290 605 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 570 / 0 ATCEL2 cellulase 2 (.1) AT1G22880 432 / 5e-149 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT1G23210 432 / 8e-149 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G71380 428 / 3e-147 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G70710 422 / 9e-145 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT4G39010 396 / 2e-134 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G11050 375 / 2e-124 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G64390 372 / 2e-123 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G39000 367 / 5e-123 ATGH9B17 glycosyl hydrolase 9B17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008208 [exp] 676 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10010307 [exp] 609 / 0 AT4G02290 493 / 2e-171 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 552 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10025880 [exp] 491 / 3e-172 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10001666 [exp] 441 / 3e-152 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10029071 [exp] 438 / 5e-151 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10002930 [exp] 405 / 4e-138 AT1G71380 706 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10018077 [exp] 406 / 5e-138 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 404 / 3e-137 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202400 [exp] 660 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 645 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 474 / 6e-165 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.008G132700 [exp] 446 / 3e-154 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.010G109200 [exp] 446 / 6e-154 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.019G069300 [exp] 432 / 6e-149 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.004G162200 [exp] 431 / 4e-148 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.009G123900 [exp] 415 / 5e-142 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.015G127900 [exp] 412 / 2e-140 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.015G128000 [exp] 393 / 3e-133 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10013418 pacid=23155076 polypeptide=Lus10013418 locus=Lus10013418.g ID=Lus10013418.BGIv1.0 annot-version=v1.0 ATGGCAACTTCTTCTTCTTCTTCTTCTTTCACTCTCCTGCTTCTCTTTCTCACTCTCCTTCCCAACTCCCATGGCGCCCATTATAACCACCGCAGCCACC CTCGCACAGCCAGTCACAACTACAGAGACGCACTCACCAAATCAATCCTATTCTTCGAAGGCCAGAGGTCCGGGAAGCTCCCTTATAGCCAGAGGCTTTC TTGGAGGAGAGACTCTGGCCTCTCCGACGGATCCGCCATGAATGTGGATTTGGTGGGAGGGTATTATGATGCAGGGGACAATGTGAAGTTCGGATTCCCA ATGGCTTTCACAACTACAATGCTGTCATGGAGTGTGCTTGAGTTTGGTGGGTTGATGAAAGGTGAGCTTTCAAATGCTAGAGAAGCTATCCGTTGGGCTA CTGATTACCTTCTCAAAGCTACTGCACATCCAGACACCATCTATGTTCAGGTTGGTGATGCGACAAAGGACCATGCTTGCTGGGAGAGACCAGAGGACAT GGATACTCCTAGAAGTGTATTCAAAGTAGACAAGAACTCACCTGGTTCCGATGTTGCTGGCGAAACCGCTGCTGCACTTGCTGCTGCTTCTTTGGTTTTC AGGAGGTGTGACCCTTCTTACTCCAGGCTCCTGCTCAAAAGGGCTATCACGGTGTTCCAATTTGCTGATAAGTACAGAGGACCTTATAGCAAAGGGCTGA AACGCTTTGTCTGCCCTTTCTACTGCTCCTACTCCGGATACCAGGATGAGTTGTTGTGGGGAGCAGCCTGGTTGCACAGGGCAACCAGAAACCCAACATA CCTCAGCTACATCCAAATCAACGGCCAGATCCTCGGAGGAGTTCAGACTCTCCATGACTACAAGAGCCACGCTGATAACTTCATCTGCTCCATCATCCCT GGCGCACCTTTCTCCTCCACCAAATACACTCCAGGTGGCCTTCTGTACAAAATGAGCGACACGAATATGCAATATGTAACATCAACTTCCTTCTTACTGT TGGCGTACTCCAAATACCTAACCTCTTCACACAAATTCGTCAACTGCGGCGGAACAATCGTCACTCCGAAGCGCCTCCGATCAATTGCCAAGAGACAGGT GAAACGAAACATCCACCTCAAAAACATTCTCAATCGATGGAGAATAACGGCATGGTTCAGTGTGGTGAGCGCGCCGCCCCCGAGCCCTGACGTGCTAGTG GGAGCGGTGGTGGGAGGTCCAGACGGCCGCGACCGGTTCCCTGACCAAAGATCCGATTACGAGCAGTCGGAGCCGTGCACGTACATCAATGCGCCGCTGG TCGGGTCGCTGGCTTATCTGGCTCACTCATTCGGCCAGCTGTAG
AA sequence Show only first row Show all	>Lus10013418 pacid=23155076 polypeptide=Lus10013418 locus=Lus10013418.g ID=Lus10013418.BGIv1.0 annot-version=v1.0 MATSSSSSSFTLLLLFLTLLPNSHGAHYNHRSHPRTASHNYRDALTKSILFFEGQRSGKLPYSQRLSWRRDSGLSDGSAMNVDLVGGYYDAGDNVKFGFP MAFTTTMLSWSVLEFGGLMKGELSNAREAIRWATDYLLKATAHPDTIYVQVGDATKDHACWERPEDMDTPRSVFKVDKNSPGSDVAGETAAALAAASLVF RRCDPSYSRLLLKRAITVFQFADKYRGPYSKGLKRFVCPFYCSYSGYQDELLWGAAWLHRATRNPTYLSYIQINGQILGGVQTLHDYKSHADNFICSIIP GAPFSSTKYTPGGLLYKMSDTNMQYVTSTSFLLLAYSKYLTSSHKFVNCGGTIVTPKRLRSIAKRQVKRNIHLKNILNRWRITAWFSVVSAPPPSPDVLV GAVVGGPDGRDRFPDQRSDYEQSEPCTYINAPLVGSLAYLAHSFGQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10013418 [exp]	0	1
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	8.9	0.8296
AT2G01210			Leucine-rich repeat protein ki...		Lus10043480 [exp]	9.4	0.8268
AT1G60060			Serine/threonine-protein kinas...		Lus10029179 [exp]	11.7	0.8219
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10005888 [exp]	11.7	0.8058
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10021034 [exp]	18.0	0.8172
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10026195 [exp]	20.4	0.7900
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	20.5	0.8005
AT1G09320			agenet domain-containing prote...		Lus10010903 [exp]	26.8	0.7749
AT4G00752			UBX domain-containing protein ...		Lus10036564 [exp]	28.0	0.7910
AT3G02645			Plant protein of unknown funct...		Lus10026964 [exp]	30.3	0.7786

Compare expression of checked genes

Lus10013418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.