Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02270 118 / 3e-33 RHS13 root hair specific 13 (.1) AT2G47540 112 / 5e-31 Pollen Ole e 1 allergen and extensin family protein (.1) AT2G47530 97 / 7e-25 Pollen Ole e 1 allergen and extensin family protein (.1) AT3G62680 94 / 1e-22 ATPRP3, PRP3 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, proline-rich protein 3 (.1) AT1G54970 84 / 6e-19 RHS7, ATPRP1 ROOT HAIR SPECIFIC 7, proline-rich protein 1 (.1) AT2G34700 47 / 2e-06 Pollen Ole e 1 allergen and extensin family protein (.1) AT2G33790 45 / 1e-05 ATAGP30 arabinogalactan protein 30 (.1) AT1G28290 44 / 7e-05 AGP31 arabinogalactan protein 31 (.1.2) AT3G09925 41 / 0.0002 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008213 [exp] 168 / 5e-51 AT2G47540 127 / 2e-36 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10005539 [exp] 135 / 5e-39 AT4G02270 103 / 1e-27 root hair specific 13 (.1) Lus10041926 [exp] 135 / 9e-39 AT4G02270 100 / 5e-26 root hair specific 13 (.1) Lus10010306 [exp] 124 / 1e-35 ND 38 / 9e-04 Lus10014013 [exp] 52 / 1e-07 AT2G34700 137 / 2e-40 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10015434 [exp] 51 / 2e-07 AT1G28290 135 / 1e-39 arabinogalactan protein 31 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201800 [exp] 130 / 1e-37 AT4G02270 118 / 1e-33 root hair specific 13 (.1) Potri.014G126250 [exp] 130 / 8e-36 AT2G47540 112 / 2e-29 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.014G126200 [exp] 130 / 1e-35 AT2G47540 114 / 3e-30 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.014G126300 [exp] 129 / 2e-35 AT2G47540 114 / 1e-30 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.014G126500 [exp] 127 / 1e-34 AT2G47540 113 / 6e-30 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.002G201900 [exp] 116 / 2e-32 AT2G47540 160 / 1e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.017G145800 [exp] 115 / 5e-31 AT4G02270 118 / 5e-33 root hair specific 13 (.1) Potri.004G044700 [exp] 52 / 7e-08 AT2G34700 142 / 8e-43 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.010G185400 [exp] 49 / 4e-07 AT5G05500 166 / 8e-53 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10013419 pacid=23155113 polypeptide=Lus10013419 locus=Lus10013419.g ID=Lus10013419.BGIv1.0 annot-version=v1.0 ATGGCTTCCATCCATTTCGCCCCCGCAGCATATGCCCTTCTCTTGTCCCTATCACTCGTCGGATCTATCGCCGGCGGCCAGTACTACCAACGCTCCGGCA GCGCCACCCATGATGACTCCTTCGAAGCTCTCAACTGGGCTCAGCCCAAGCCAGAAGAACCAGAGATCAAGCCCGAGAGTATGACATTCCCCAAATTCGG AGAATCTCCTGACTATTATTATAAGCCCAAAATTCAGCCACACGGGCCAGTCCAGAAGCCCAGTAGTACCAGGCCGGAGCCCGTCAAGCCACAAACCAAT ATTGGGTACGGCCCGAAGAAGTCGGAAGAAGACGCATATCCTATTGCAGTTGAAGGAACAGTCATTTGCAAATCAGGCTCCGAGTATAATCCCATTAAAG GAGCCGTGGTGAGAATAACATGTTGGGGAGTGGAAGGATACAACAAGTTAGCAAGTCCACTAGCGTGGAAGGCTGGTCCAACTGACGCCAAGGGCTATTT CTTGAAAACTCTTCACTCTAACAGCGTTAAAGACTTGGCGGACAAGTGCAAAGCTTATGTGGAGCGATCTCCGATGAAGAATTGCAGCGTGGCGAGCGAT GTGAACAGAGGGATTACCGGTTCGTCGCTGTCTTCGTATCGCATTCTACACGAAAAGCGCATCAAGTTGTACTCGGTTGGTCCTTTCTTCTACTCCCAGT CGCCCAAGAGTACTCCTGCTGCCTACAGATAA
AA sequence Show only first row Show all	>Lus10013419 pacid=23155113 polypeptide=Lus10013419 locus=Lus10013419.g ID=Lus10013419.BGIv1.0 annot-version=v1.0 MASIHFAPAAYALLLSLSLVGSIAGGQYYQRSGSATHDDSFEALNWAQPKPEEPEIKPESMTFPKFGESPDYYYKPKIQPHGPVQKPSSTRPEPVKPQTN IGYGPKKSEEDAYPIAVEGTVICKSGSEYNPIKGAVVRITCWGVEGYNKLASPLAWKAGPTDAKGYFLKTLHSNSVKDLADKCKAYVERSPMKNCSVASD VNRGITGSSLSSYRILHEKRIKLYSVGPFFYSQSPKSTPAAYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	0	1
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Lus10017402 [exp]	2.0	0.9478
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10004315 [exp]	2.6	0.9091
AT1G63450		RHS8	root hair specific 8 (.1)		Lus10000604 [exp]	3.5	0.9337
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10014137 [exp]	3.5	0.9164
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10019993 [exp]	4.2	0.9047
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	4.9	0.9252
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	5.5	0.9177
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	6.3	0.9241
AT1G11920			Pectin lyase-like superfamily ...		Lus10011258 [exp]	8.4	0.8731
					Lus10012084 [exp]	9.3	0.8389

Compare expression of checked genes

Lus10013419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.