Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06760 124 / 3e-35 Drought-responsive family protein (.1.2) AT5G49230 123 / 6e-35 HRB1 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) AT4G02200 117 / 1e-32 Drought-responsive family protein (.1.2.3) AT3G05700 114 / 2e-31 Drought-responsive family protein (.1) AT5G26990 112 / 2e-30 Drought-responsive family protein (.1) AT1G02750 110 / 8e-30 Drought-responsive family protein (.1.2) AT1G56280 99 / 1e-25 ATDI19 drought-induced 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010305 [exp] 368 / 5e-131 AT3G06760 108 / 5e-29 Drought-responsive family protein (.1.2) Lus10001462 [exp] 231 / 3e-77 AT3G05700 124 / 5e-35 Drought-responsive family protein (.1) Lus10031467 [exp] 129 / 7e-37 AT5G26990 253 / 1e-85 Drought-responsive family protein (.1) Lus10002441 [exp] 119 / 3e-34 AT5G26990 95 / 3e-25 Drought-responsive family protein (.1) Lus10037819 [exp] 118 / 7e-33 AT5G49230 198 / 3e-64 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10015214 [exp] 87 / 5e-21 AT5G26990 194 / 5e-63 Drought-responsive family protein (.1) Lus10017097 [exp] 82 / 3e-19 AT5G49230 131 / 2e-38 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10015412 [exp] 75 / 4e-16 AT5G26990 123 / 1e-34 Drought-responsive family protein (.1) Lus10037717 [exp] 69 / 2e-13 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200500 [exp] 159 / 9e-49 AT3G05700 152 / 7e-46 Drought-responsive family protein (.1) Potri.010G000800 [exp] 145 / 2e-43 AT5G49230 190 / 5e-61 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.014G125500 [exp] 144 / 5e-43 AT3G05700 148 / 2e-44 Drought-responsive family protein (.1) Potri.013G011200 [exp] 139 / 3e-41 AT3G05700 250 / 1e-84 Drought-responsive family protein (.1) Potri.008G213400 [exp] 136 / 7e-40 AT5G49230 196 / 2e-63 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.005G020900 [exp] 132 / 2e-38 AT3G05700 224 / 3e-74 Drought-responsive family protein (.1) Potri.019G027300 [exp] 82 / 4e-20 AT5G49230 123 / 1e-36 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.011G057200 [exp] 79 / 7e-18 AT3G06760 110 / 2e-29 Drought-responsive family protein (.1.2) Potri.012G086500 [exp] 69 / 3e-14 AT1G56280 92 / 6e-23 drought-induced 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF05605 [flax] [poplar] zf-Di19 Drought induced 19 protein (Di19), zinc-binding
Representative CDS sequence Show only first row Show all	>Lus10013420 pacid=23155111 polypeptide=Lus10013420 locus=Lus10013420.g ID=Lus10013420.BGIv1.0 annot-version=v1.0 ATGGAAGACGATAAGTGGAGCATCGGCCGCCTGTCTAGTGCTTCTTCTAGGTCTTATCAGCAGCAGGATCATCTTTGCATTGATTTTGAGGAAGAAGCGG AAGATTACCTAATGGCGGATTATCCGTGCCCATATTGCGAAGACGATTTTGATTTGGTTGAACTGTGCTGTCATATAGATGATGAGCATCCGTTCGAACC AAGCTCAGAGATGTGTCCTGTTTGTGGCCTAACGATATCTATGGACATGGTTGGGCACATTACATCGGAGCATGGAGACATTGCTCACAGTTTACAGAAG TTGAAACGCCGGAAAGGGGATTCACGGTCACCACTCTCTTCTCTGAAGAAAGAAGCAGCGGAGGACTATTGGTCGTCTCTTTTTTCTCGGTCTTCTGGTC CAGCATTTCCCTCTGCTAGTGACCCGTTACTGTCCTTCATACAAAACATGCCCTCTGTGGACAAAGCTGAAAACTCTGTGCCACTTCTGGAAATTCAAAT AGAAGCTGCAAATGAGCAATCCGAAGATAAACAACGATCTGCCAGTGCTGTTACTTCCCTTCCATTATCAGACAAAGAGCTGACGGAGAAGACTAACAGG AGTCGGTTCGTGCAGGGTCTGCTGTTGTCCACCATGTTCAACGATGACTTATGA
AA sequence Show only first row Show all	>Lus10013420 pacid=23155111 polypeptide=Lus10013420 locus=Lus10013420.g ID=Lus10013420.BGIv1.0 annot-version=v1.0 MEDDKWSIGRLSSASSRSYQQQDHLCIDFEEEAEDYLMADYPCPYCEDDFDLVELCCHIDDEHPFEPSSEMCPVCGLTISMDMVGHITSEHGDIAHSLQK LKRRKGDSRSPLSSLKKEAAEDYWSSLFSRSSGPAFPSASDPLLSFIQNMPSVDKAENSVPLLEIQIEAANEQSEDKQRSASAVTSLPLSDKELTEKTNR SRFVQGLLLSTMFNDDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06760			Drought-responsive family prot...		Lus10013420 [exp]	0	1
AT3G47610			transcription regulators;zinc ...		Lus10024226 [exp]	5.5	0.8436
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	5.8	0.8848
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10032724 [exp]	17.0	0.8604
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	19.1	0.8820
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031460 [exp]	19.8	0.8393
AT5G05800			unknown protein		Lus10024329 [exp]	21.5	0.8443
AT3G51500			unknown protein		Lus10014816 [exp]	21.6	0.8558
AT4G34140			D111/G-patch domain-containing...		Lus10039947 [exp]	24.3	0.8530
AT3G25570			Adenosylmethionine decarboxyla...		Lus10000156 [exp]	25.7	0.8165
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	27.2	0.8640

Compare expression of checked genes

Lus10013420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.