Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02210 390 / 6e-134 unknown protein AT2G24960 220 / 1e-64 unknown protein AT5G05800 107 / 2e-25 unknown protein AT4G02550 87 / 4e-19 unknown protein AT3G11310 82 / 9e-17 unknown protein AT3G11290 77 / 5e-15 unknown protein AT2G19220 61 / 4e-10 unknown protein AT1G30140 48 / 4e-06 unknown protein AT5G27260 45 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010304 [exp] 705 / 0 AT4G02210 395 / 1e-135 unknown protein Lus10026250 [exp] 225 / 9e-67 AT2G24960 750 / 0.0 unknown protein Lus10042421 [exp] 98 / 1e-24 AT2G24960 92 / 1e-22 unknown protein Lus10025958 [exp] 87 / 4e-19 AT2G24960 102 / 4e-24 unknown protein Lus10014257 [exp] 89 / 6e-19 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016838 [exp] 64 / 1e-11 AT2G24960 71 / 4e-14 unknown protein Lus10002039 [exp] 65 / 2e-11 AT3G11290 91 / 2e-20 unknown protein Lus10024329 [exp] 61 / 6e-10 AT5G05800 81 / 7e-17 unknown protein Lus10023062 [exp] 58 / 4e-09 AT4G02210 67 / 4e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200600 [exp] 299 / 3e-97 AT4G02210 471 / 1e-163 unknown protein Potri.006G265900 [exp] 266 / 4e-82 AT2G24960 761 / 0.0 unknown protein Potri.013G025200 [exp] 191 / 1e-53 AT2G24960 514 / 2e-168 unknown protein Potri.004G172900 [exp] 90 / 5e-20 AT2G24960 96 / 1e-21 unknown protein Potri.003G190900 [exp] 83 / 1e-17 AT4G02550 407 / 8e-144 unknown protein Potri.006G191850 [exp] 69 / 4e-14 AT4G02550 71 / 2e-15 unknown protein Potri.005G252500 [exp] 72 / 6e-14 AT4G02210 74 / 9e-15 unknown protein Potri.011G163248 [exp] 71 / 1e-13 AT4G02550 93 / 4e-22 unknown protein Potri.010G215600 [exp] 69 / 5e-13 AT4G02550 77 / 7e-16 unknown protein Potri.002G023800 [exp] 66 / 5e-12 AT2G24960 89 / 2e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013421 pacid=23155103 polypeptide=Lus10013421 locus=Lus10013421.g ID=Lus10013421.BGIv1.0 annot-version=v1.0 ATGGCAACCCGCGGCGGAGGTGATCTTCAGCGGACGGTGTGGACGCCGGAGACGGACAGATACTTCATCGATCTCCTGCTGGATCAAATGAAAGGAGGGA ACAAGTTCGACGACCATCTCTTCAGCAAGCGAGCATGGAAGCAGATGACGGAACTGTTCAACGCCAAGTTCAAGTTCCACTACGACAAGGATGTCCTCAA GAACCGCCACAAGACGCTCCGGAATCTGTACAGCGCCGTCCGGCGGCTACTCGACTGCGATGGATTCAGATGGGACGACAGCCGGCTGATGGTCGCCGCC GATAACAGCATTTGGGAACAACATCTCAAGGAAAGCGCCGCTCAGGATATGAAGACCGCGGCGGAGTCCGGCGGTGGCGGTGAAGAGATTCCAATTGTGT TAGTGGCGGCGGCGGCGGTGGGCAACAGAGTGAGGACGTATTGGCAGCCGCCGATGGACCGTTACTTCATCGATCTGATGATGGAGCAAGTACAGAAGGG GAATCAGATCGACGGAGCTTTCAGGAAACAATCATGGGCGGAAATGATTGCGGATTTCAATTCCAAGTTTGGCTTTGGCTACGACGTTGATGTTCTGAAG AATCGGTACAAGACGATGAGAAGGCAATACAACGCGATCAAGAGCCTGCTTGAGCTCGATGGATTCACTTGGGATGATCACCGTCAAATGATCACAGCAG ATGATTCCGTCTGGCAAGACTACATCAAAACTCATACTGATGCGAGGCAATACATGATGAGGCCAGTACTGTACTACAAAGATCTATGCACGATATGCAG AGGAGACAAATACAATCACGAAGAGCCTGCAACATCGGCCGAAACTGAAGACTTCGGGGTTGCATCAAACGCCATGGTTTCCGAAATCGGAAACAAACGT CGATTAGAAGGGCAGCAGGAAGTCTGTTACCCTAAGAAGCATACACCTGCTGCTGCCGCTGCGACGGTTTCGAGCTCGCAGCAGCCGATCTCGATAGAGC GGGTGGTAGAGGCCATCCAGGCTCTGCCGGAAATGGACGAGGATCTAATATTAGATGCGTGTGATCTGTTAGAGGACGATTTCAAAGCCAAGACATTCAT GGCTTTGGATGTGAAACTGAGAAAGAAATGGTTGTTGAGGAAACTACGTCCTTCGTCCGATATAAAAATATAA
AA sequence Show only first row Show all	>Lus10013421 pacid=23155103 polypeptide=Lus10013421 locus=Lus10013421.g ID=Lus10013421.BGIv1.0 annot-version=v1.0 MATRGGGDLQRTVWTPETDRYFIDLLLDQMKGGNKFDDHLFSKRAWKQMTELFNAKFKFHYDKDVLKNRHKTLRNLYSAVRRLLDCDGFRWDDSRLMVAA DNSIWEQHLKESAAQDMKTAAESGGGGEEIPIVLVAAAAVGNRVRTYWQPPMDRYFIDLMMEQVQKGNQIDGAFRKQSWAEMIADFNSKFGFGYDVDVLK NRYKTMRRQYNAIKSLLELDGFTWDDHRQMITADDSVWQDYIKTHTDARQYMMRPVLYYKDLCTICRGDKYNHEEPATSAETEDFGVASNAMVSEIGNKR RLEGQQEVCYPKKHTPAAAAATVSSSQQPISIERVVEAIQALPEMDEDLILDACDLLEDDFKAKTFMALDVKLRKKWLLRKLRPSSDIKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02210			unknown protein		Lus10013421 [exp]	0	1
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	3.5	0.8546
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10035587 [exp]	4.1	0.8824
AT1G53800			unknown protein		Lus10003930 [exp]	8.4	0.8600
AT1G77270			unknown protein		Lus10042760 [exp]	18.8	0.7918
AT1G66330			senescence-associated family p...		Lus10002290 [exp]	23.5	0.8042
AT4G30845			unknown protein		Lus10026098 [exp]	26.8	0.8367
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10002676 [exp]	27.6	0.8256
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10034149 [exp]	34.6	0.8048
					Lus10008149 [exp]	35.0	0.7774
AT5G25330			Core-2/I-branching beta-1,6-N-...		Lus10002919 [exp]	36.4	0.8031

Compare expression of checked genes

Lus10013421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.