Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15100 371 / 8e-128 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 262 / 3e-85 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1) AT5G57090 196 / 4e-57 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT2G01420 194 / 2e-56 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G70940 188 / 5e-54 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G77110 183 / 1e-52 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT1G23080 182 / 3e-52 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G73590 180 / 3e-51 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010303 [exp] 631 / 0 AT5G15100 399 / 1e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10020193 [exp] 267 / 3e-87 AT5G16530 548 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10026994 [exp] 257 / 4e-83 AT5G16530 532 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10020830 [exp] 197 / 2e-62 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10009686 [exp] 194 / 4e-61 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018007 [exp] 189 / 3e-59 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 199 / 4e-58 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10042004 [exp] 192 / 1e-57 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 184 / 1e-52 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078300 [exp] 421 / 1e-147 AT5G15100 358 / 5e-123 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Potri.004G124200 [exp] 418 / 2e-146 AT5G15100 378 / 2e-130 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Potri.019G052800 [exp] 267 / 3e-87 AT5G16530 471 / 7e-168 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Potri.013G087000 [exp] 258 / 6e-84 AT5G16530 513 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 201 / 3e-59 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 198 / 5e-58 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 198 / 7e-58 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 198 / 8e-58 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 196 / 6e-57 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 191 / 2e-55 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10013422 pacid=23155127 polypeptide=Lus10013422 locus=Lus10013422.g ID=Lus10013422.BGIv1.0 annot-version=v1.0 ATGATTTCATCAGGTGACATTTACCATGTGGTGGCAGCCACAATCCCACTGTACGTCGCCATGATCCTAGCCTACATTTCTGTCAAATGCTGCAAACTCT TCAATCCACAGCAATGTTCTGGAATCAACAAGTTCGTTTCCAAATTTTCAATCCCTCTCTTGTCTTTCCAGATCATCTCCACCAACAACCCTTACCAAAT GAACCTCAAGCTCATACTTTCAGACTTTTTGCAAAAACTGCTTGCGATTCTGCTGCTCGGTTTGGCCTCCAGGGTTTGGTTCCGGAGTTGGTCGAGGCTC GATTCTGTCGTAATAACCGGTTTGTCCCTCTCGACGCTGCCCAACACTTTGATCCTCGGGATCCCTCTCCTGCGAGCCATGTACGGAGGCGAATCCGCTG ACTCGCTGCTTTCGCAGATCGTGTTCTTACAGAGTATAGTTTGGTACAATCTGCTGCTGTTTCTGTTCGAGTTACATTCTGCGAGGAGGCCGGTTTCGAC TACTGATAGCCGAAATTTGCCTCCTCCGGTGGAAACCGCAGACGGCGAGCGATCAAAGGACGGAGGCCATGAAGAGGAAGCAAAAGAAGTGAAGACAGTG AGCATTCTGATTATAGCAGGAAAGAAGCTGATGAGGAATCCTAACTTCTATGCTACATTGATTGGCTTCATTTGGGCATGCATTCATTTCAGGTGGGGAG TAAAACTGCCAGACATCATTGATAAATCCATTATGATATTGGCAACGGGAGGCCTTGGCATGGCAATGTTCAGCTTAGGTCTGTTTATGGCATCAAGGGG AAGTATAATAGCATGCGGGGTTAAGATGGCAGGGGTGGCAATGGTGATGAAGTTCGTGGCAGGGCCGGCTTTAATGGCGATCTCTTCTGTGGCTGTGGGA TTGAGAGGCACGGTGCTTAGAGTTGCTATCGTTCGGGCTGCTCTGCCCCAAGGGATAGTTCCATTTGTGTTTGCAAAAGAGTACAATGTGCATCCAGACA TTTTGAGCACAGCTGTTATCTTTGGGATGTTCGTTGCCTTGCCAGTAGCTCTCGCCTATTACTCATTGCTAGCACTCTGA
AA sequence Show only first row Show all	>Lus10013422 pacid=23155127 polypeptide=Lus10013422 locus=Lus10013422.g ID=Lus10013422.BGIv1.0 annot-version=v1.0 MISSGDIYHVVAATIPLYVAMILAYISVKCCKLFNPQQCSGINKFVSKFSIPLLSFQIISTNNPYQMNLKLILSDFLQKLLAILLLGLASRVWFRSWSRL DSVVITGLSLSTLPNTLILGIPLLRAMYGGESADSLLSQIVFLQSIVWYNLLLFLFELHSARRPVSTTDSRNLPPPVETADGERSKDGGHEEEAKEVKTV SILIIAGKKLMRNPNFYATLIGFIWACIHFRWGVKLPDIIDKSIMILATGGLGMAMFSLGLFMASRGSIIACGVKMAGVAMVMKFVAGPALMAISSVAVG LRGTVLRVAIVRAALPQGIVPFVFAKEYNVHPDILSTAVIFGMFVALPVALAYYSLLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Lus10013422 [exp]	0	1
AT5G48500			unknown protein		Lus10009584 [exp]	2.4	0.8476
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10029622 [exp]	2.4	0.8276
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	3.7	0.8435
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023363 [exp]	6.5	0.8147
AT3G27030			unknown protein		Lus10041551 [exp]	9.9	0.7935
AT5G49100			unknown protein		Lus10006504 [exp]	9.9	0.7778
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10023102 [exp]	10.4	0.8239
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	11.4	0.7899
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	12.1	0.8030
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	13.5	0.7566

Compare expression of checked genes

Lus10013422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.