Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44900 327 / 2e-99 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 324 / 2e-98 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT2G13620 308 / 2e-92 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G44930 306 / 3e-92 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT1G08140 305 / 3e-91 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT3G44920 294 / 2e-87 ATCHX11 cation/H+ exchanger 11, cation/H+ exchanger 11 (.1) AT3G44910 291 / 2e-86 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT2G28180 281 / 4e-82 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT5G22910 273 / 1e-79 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT1G08150 273 / 2e-79 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040963 [exp] 1375 / 0 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10000161 [exp] 649 / 0 AT5G22900 320 / 6e-99 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10040961 [exp] 480 / 6e-163 AT5G22900 271 / 7e-83 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10000154 [exp] 393 / 3e-130 AT5G22900 216 / 2e-63 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10041344 [exp] 323 / 5e-98 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10035312 [exp] 318 / 3e-95 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 315 / 8e-95 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10037374 [exp] 307 / 2e-92 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021413 [exp] 290 / 1e-85 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182900 [exp] 655 / 0 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G099000 [exp] 642 / 0 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G171200 [exp] 620 / 0 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098300 [exp] 336 / 4e-103 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 326 / 1e-99 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.019G123700 [exp] 326 / 5e-99 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 294 / 3e-87 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 286 / 1e-84 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 283 / 1e-83 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 268 / 6e-78 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10013423 pacid=23155108 polypeptide=Lus10013423 locus=Lus10013423.g ID=Lus10013423.BGIv1.0 annot-version=v1.0 ATGGGTTCGTTAACAACAGGAGTTCATTCTGATAAGATCCACTTAAGTATAAGTGGAGATTGCTATGAATACATACCAGCTTCATCACAAGGGATATGGA ACCTGCAATATGGAGAAAGCATCCTCAAGTTTCCTTTAGTTCGCTTCCATGTCCAGCTCCTCATTATGATATTCCTTCCCTACGCCTTCCATTATTTCCT CAGGATCCTCTATTTACCTCGAATAACCTCTGAGATGCTGACGGGTTTCGTCCTTGGACCAAATGTACTACAAAAATTCTTTCCCAATGTAGCAAGGCTA ATATTCCCACCAGTGCAGAACCAGACCATGAACTCACTATCCAAGGTAGGGTTCATCATGTTCACATTCCTCTCCGGAGTAAGGATGGATCCCGCATTGG TCAAGATAACGGGAAAGAAAGCCCTCGTGTTGGGGTTTCTGATCTTCGTCATCCCCTTCACAATGGTACATACTGTTAGTATGGAGTACCCGCAGAGTAG CGGTCGCTCCGTCAGGGTAAAGTCCGACAACTTGAAGAGCACAGATATATACCTGGCTCTCATCACCACATCACAATTTGTTGGGGTAAACACTATCCTG ATGCAGCTCAAGATCACAAATACCCAATTGGGCCATCTAGCTCTAGCCTCCACATTGACAAGCGAGTTGCTCCGGTTCTCCTACTCGTTCTTTCTTGGAT ACTTGGAAGCTTTGTTAACCATTGAGCCATTTGTTGGGGCAAAGATATTGGTGATCAGCTTCCTTTTTACGCTATTGATCCTTGTGATACTGAAGAATGT GGTGCTCTGGTTTATTAAGAAGACACCAAGTGGGAAACCCATGAATGAGATTTACATACACATCGTTGTTGGGGTGTTGATGACATTAGCATCTTCTGGC GATGCTGCTGGACTTTATTACCTCTTTGGCCCCTTCCTCCTTGGGTTGGTGATCCCAGCTGGGTCCCCACTAGCAACTAGTGTGATTGCCAAGCTTGAAA CTACCGTCTCTGGTATTTTTATGCCTATGCTCTTGACTTTCTGTTCAATAACATTTAATTTCAGCACGTTTATTGCGACGTACGACCAGCGGTTGAACTT CCAGATTTCGGTTTATGGATTTATCATCAAGTTGGTATTAACTCTCTTGTCTTGCATCGCCTGTAAAATGAGTGCGAGAGATTCAATTGCCTTTTCCCTC ATTGTCAATACCAAAGGAGCCCTTGAAGTTGCCTCCATGTTGAGCTTCAGTGGTTTGTCTGCAGGGGAGCCGGACGCAACGACTGCGATACTTCTTGTGT TCATCACAGCAACAATAACCCCGCCATTGATAAAGCTGTTATACGATCCAGCTAAGCAATACGTTGGGTATAAAAAGAAATGTGTTCAATTCGCTTCCTA CAACTCGGAGCTACCAGTTTTGGTATGCGCCCATAAGCAAGAAGATGCAGTGGCGGCCCTTAAAATGCTCGAGTTCTGGAATCCAACTAGACAAAGCCCT CTCTCCATATTTGGTCTCTGCCTACAAGAGCTCGTAAGCAGCTACACGCCTCAGTTGATCAACCACCAATTGGGTCAAAAGATCACCGACTCCGGAGCCG CAGTCGACAATCACCCACATCGAGGCAACAACTATGGATCACAACCCATCGTCAATGTCTTCAACTACTTCAAAACAGAGTTCAAGAAGCTGGTACAGGT CAACGTCTTCACCGCCATATCGCCTCTGAAGCTCATGTACGAGGACATCTGTTGGATCTCGTTTGACAAGGCCGTCTGCATCGTCATACTTCCATTTCAT AAGAAATGGAACTCAAAGGGGCAGCTGATACACGAGAGTAGCGAATTGAGGAGTTTGAATTGTACCGTGTTGGAAAGGGTGCCCTGTTCTGTGGGGATAT TAATTGATCGCCGGACCAACCATGGGATTAACTCAATGTTCGTGTCGTTGCCGGTGTATAGAGTGGTGGTGTTGTTCTTCGGCGGGGCAGACGATCGGGA ATCACTGGCGATTGGGGGTAGGATGACTGGAAACCCTAGGGTAAAATTGACGGTGATGAGGTTCCGAGGTGAAGTGGAGGAGTATGGTGGTAGGAACAAT CAGAGTTGGGATGAGGTGTTCGACGAGGAGAGCATGAGAATGTTGAGGCAGGATGCAGCGGTGGGAGGGGAGAACATAAAGTTTGTGGAGCAGAAGGTGA AAGACGGGTCAGACACGTCGCGTATAGTTCATACGTTGGGGGATGGTTTTGATTTGGTGATAGTTGGCAGGCGACACGAAGAGGACATGGAGGCATTTTC GGGGCTGGCGACATGGTCAGAGTTGCCGGAGCTAGGTGTCATCGGAGACATTCTTGCCGGTCTGGAAATGAGCACTTCTGTATCAGTGTTGGTGGTGCAG CAACAGATTATGCAGACCAGTCACAGCAGCGTTTTGAACTCCTAG
AA sequence Show only first row Show all	>Lus10013423 pacid=23155108 polypeptide=Lus10013423 locus=Lus10013423.g ID=Lus10013423.BGIv1.0 annot-version=v1.0 MGSLTTGVHSDKIHLSISGDCYEYIPASSQGIWNLQYGESILKFPLVRFHVQLLIMIFLPYAFHYFLRILYLPRITSEMLTGFVLGPNVLQKFFPNVARL IFPPVQNQTMNSLSKVGFIMFTFLSGVRMDPALVKITGKKALVLGFLIFVIPFTMVHTVSMEYPQSSGRSVRVKSDNLKSTDIYLALITTSQFVGVNTIL MQLKITNTQLGHLALASTLTSELLRFSYSFFLGYLEALLTIEPFVGAKILVISFLFTLLILVILKNVVLWFIKKTPSGKPMNEIYIHIVVGVLMTLASSG DAAGLYYLFGPFLLGLVIPAGSPLATSVIAKLETTVSGIFMPMLLTFCSITFNFSTFIATYDQRLNFQISVYGFIIKLVLTLLSCIACKMSARDSIAFSL IVNTKGALEVASMLSFSGLSAGEPDATTAILLVFITATITPPLIKLLYDPAKQYVGYKKKCVQFASYNSELPVLVCAHKQEDAVAALKMLEFWNPTRQSP LSIFGLCLQELVSSYTPQLINHQLGQKITDSGAAVDNHPHRGNNYGSQPIVNVFNYFKTEFKKLVQVNVFTAISPLKLMYEDICWISFDKAVCIVILPFH KKWNSKGQLIHESSELRSLNCTVLERVPCSVGILIDRRTNHGINSMFVSLPVYRVVVLFFGGADDRESLAIGGRMTGNPRVKLTVMRFRGEVEEYGGRNN QSWDEVFDEESMRMLRQDAAVGGENIKFVEQKVKDGSDTSRIVHTLGDGFDLVIVGRRHEEDMEAFSGLATWSELPELGVIGDILAGLEMSTSVSVLVVQ QQIMQTSHSSVLNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10013423 [exp]	0	1
AT5G04900		NOL	NYC1-like (.1)		Lus10033408 [exp]	14.9	0.8296
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10011484 [exp]	15.4	0.8214
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	15.5	0.8060
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10040950 [exp]	16.2	0.7785
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	18.7	0.7762
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	18.7	0.8086
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	19.7	0.7979
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10026895 [exp]	21.7	0.8007
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	21.9	0.7921
AT5G13260			unknown protein		Lus10002574 [exp]	23.4	0.7916

Compare expression of checked genes

Lus10013423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.