Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19780 743 / 0 unknown protein AT1G33780 53 / 6e-07 Protein of unknown function (DUF179) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040970 [exp] 1440 / 0 AT3G19780 500 / 5e-157 unknown protein Lus10006653 [exp] 172 / 3e-50 AT3G19780 99 / 2e-25 unknown protein Lus10009463 [exp] 60 / 6e-09 AT1G33780 379 / 6e-132 Protein of unknown function (DUF179) (.1) Lus10001286 [exp] 59 / 1e-08 AT1G33780 386 / 9e-135 Protein of unknown function (DUF179) (.1) Lus10005224 [exp] 57 / 4e-08 AT3G29240 291 / 2e-98 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070400 [exp] 1081 / 0 AT3G19780 770 / 0.0 unknown protein Potri.019G073000 [exp] 61 / 2e-09 AT1G33780 349 / 4e-120 Protein of unknown function (DUF179) (.1) Potri.004G125800 [exp] 52 / 8e-07 AT3G29240 358 / 3e-124 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02622 [flax] [poplar] DUF179 Uncharacterized ACR, COG1678
Representative CDS sequence Show only first row Show all	>Lus10013425 pacid=23155090 polypeptide=Lus10013425 locus=Lus10013425.g ID=Lus10013425.BGIv1.0 annot-version=v1.0 ATGAAGCACAAAGTGGTAGGACTGCTCCTCTCACTACTCTCGGTCTTCGTCCTCACCGCCGCCGTCGAATCATCACAGCCGTCGGGAATCGATCGCAATC TGGAAGGCCTTGGAAGATGGCACATCCTCGACAGGCGCAACTACTCATCTCAGATCAGAATGCATCCCAACATCATCCTGATCGTCTCCGTCCCATGGTC CGGCGAATCGAGGTCCTTGATGAGGGAAATATCCGATTTAGTCTCTGTCCGTAATGAGGAATTCGGCTCCCTCGTGTTGATGTATCTGCATAGGAACAGG GAGAAGATGCTCGCTGATGCGATTGGTGCGGCCGGTGAGGGGAGAGTTACAGTTTTCTATCTCCATCACTCTGTGCCTTACAAGTATAAAGGCAGGTTTG GAGCCGTAAGTATATTGTACTCGATTAGTCCTTATTTGTCGCACGAGCCTGAAGAGATTCCTCTCAAGGAGCTCAAGTCGGAGCACGAGCTACGGACGTT CGTTGAATCGACCGACAAAGCCGTTCTTCTCATGGAGTTCTGTGGATGGACGCGTCAGTTGCTGAGCAGGGCTTATAAGAACGAGACTCATAGTAGCGGT TTCCAATTCCAAGGGGATTTTGCTGGCGCAAATGGAGAAATTGAGAGACCACCCGTTTACCTAGGACAGGAAAACCAGAAGGTGGCTGGGGATGAGAAGG CAATGCTGACATGTGGGACTGAAAGTGCATTTAGTGGCATTCCTTCACTTGGAGAATTCAGGTCTGGAAACGATAGCTTCACTGGCCAGGAAGATGAGTC CTGGGGTGCTGAGAAAGCAAAATCGGGCACTGGATTTTCTTGTACCTATGAACAGTTTCAACAATTCGACTCAGTCTTCTCAAAGTTCATGGCTGTGGCA AGAGAGTTCTTTCTACCTAATGAAAAGCATAGATTTGGTCTTGTTTCAGAACAGTCGTTGCTTTCATATCTTGGTATTGGGGACCCTGGTTCTTGGGCAG TAATGCTTGCCTGTAATGGATGTCAAACTCCTTCAAGGATTCTGAAGAATGATGATGATATTAAGACTACTCTGCAGTTAGACAAGTCAGTTGTTATTGA GCTGGAAGGCAATGGAGAGGATGCTGATCCTACGTTCCCATCAAATAAGCCTTCAGTGGTTCTTTTTGTGGATAGGTTGTCCGACTTATCAGAAATGAGA AGAAAGAGCAGGGAAGCTCTTCATCAGTTCAGAGACCTTGCATTTCATCATCAACTTCCGGATAGCACGAGGCATCAAAATGATGACAGGTCAGAAAGTT CGTACAACCAAAAGCCTCAAAAGTTGCATGTTCTATCTTCAGGCCATCCTGCACTGAAGCTATCGTCTTCAGCTCAGAGGGTTAATTTAAAGGATAAGAT GTCAATAATGGTCGTAAATGATGCTAAACATGCTCTTTTAGAGAATGTGCAAGTGGATTTTCAGGGGAAGTCATTGCTAGAGATCCTAAATTTCGTTGTT CAGCAGAAGAAGGAAGCAACACTGAGTTCAGTGGCAAAAGAGGCTGGTTTCCAACTTTTGTCTCAGGACCAGAGTATAAAGCCAGACTTACTGCCAACAG ACGGTGAGGTAGAGGCGACCCATGACTCGTCTAAATCTTCAAAATTGAGTCCCACCACAAGATCTGACAACTGGGACAAGGATTTGGCTCTTGAGGAAAG GTCCAGCTATGTTGGGTCTCCTCAAGTTGTGGAGAAGTCAGCTTATGTGGTCACATCAGACGACCCTATAAAGCTTGATAAACTTTTATCAGATGTTGAG GTATCAGTTCTAGAAACCATGAAATTACAACCAGAGCTATATCCTAGTGTGGGCACGTCAAGTGAAGAGCTAGAATTTGGGAGGTTTCATGGCTCTTTTT TGTTTTCTGATGGAAACTACAGATTACTTACGGCCTTGACAGGGGAGACTAGGATCCCTTCCTTGGTGATAATGGATCCTGCTTCACAACAACACTACGT CCTCCCAGGAAATATTGATTTCAGCTATGCCACGATTGAAAGCTTTGTTGACAGATTTCTGAACAAAACTCTTGTCCCATTTCAACTCTCTGAGTCTGAA CCTGCAAGCTCCAGGGAAGGTCCCTACCCACCTTTTGTTAACCAGAATTTCCATGAGGTAGACTCTATCCCTCGGGTTACAGCTCACAGTTTCCATGAAA TGGTCATTGGTTTTAATAAATCTGATAATGAGAACACGGCTGGTGCGTGGAATGAAGATGTGCTGGTCCTGTTTAGCAACATCTGGTGTGGGTTTTGCCA GAGAATGGATTTGGTAGTTCGTGAAGTCTTTCGGGCAATAAAAGGCTGTATGAATGTGTTAAAAATCGGTTCTAGCATCAGAGACCCAATCTTCAGCTGC TCCTCGGAGGTGAAATTTCCTAAGATCTTCTTAATGGACTGCACACTGAATGATTGTAGTCTTATCTTGAGATCAATGGGCACGAGAGATGTTTATCCCG CTCTTTTGTTGTTTCCAGCAGAAGTAAAAGTCGCTATCCCTTATGAAGGAGATGCAACAGTGCATAAGATTATTGAGTTTATAGTTAATCATAGCAGCGA CTCAGAACATCTAACCAATGAGAACGGAACGTTAAGGACTGTATTTGGAAAACGTGGCACAGTTGAGAAGTTAGTGAAGGATCCATCAGTAACGACCAAA CTTGCCAAGGATGCCTATGTTGAACCCCAGGAGGTGATATTGGAACACCGAGCAACAGAAAAAGCAGTGACCTACAGTGGAACTGGATCTATTACATCCA GCCAACCTCAAGTGGTGGTTGGCTCAATTCTAACTGCTACGGAAAAGATAACTTCACAGCCGTTTGACAACTCACAAGTAATCGTCGTTGCAGCCGACGA AAAGGAAGGATTTCAGGGTCTAATCTATAACAAGCCTCTAGGTTGGGAGTCTGTTCGGAGTCTGGAAGAAGGGCTGAAAGTGCTGAAAGAGGCTCCCCTG TCTTTCGGTGGTCCACTTGTGATATCTGGAATGCCTCTAGCTGCATTAACAAGAGAAGCAATCGAAGATGATGATGATGAACTCCCAGAAGTTGCCCCAG GCGTGTACTTCCTTAATCAACAAGCTACACTCGACGAAATCGAAGCCATCAGAGCAGGGAATCAAACTGTGTCTGATTACTGGTTCTTTCTGGGGTTTTC AAGCTGGACCTGGGAACAACTGTTCAATGAGATTGCCGCAGGTTCCTGGGATGTTAACGAGCGTGGCATTGAGTACTTGGATTGGCCTGCACGTTAG
AA sequence Show only first row Show all	>Lus10013425 pacid=23155090 polypeptide=Lus10013425 locus=Lus10013425.g ID=Lus10013425.BGIv1.0 annot-version=v1.0 MKHKVVGLLLSLLSVFVLTAAVESSQPSGIDRNLEGLGRWHILDRRNYSSQIRMHPNIILIVSVPWSGESRSLMREISDLVSVRNEEFGSLVLMYLHRNR EKMLADAIGAAGEGRVTVFYLHHSVPYKYKGRFGAVSILYSISPYLSHEPEEIPLKELKSEHELRTFVESTDKAVLLMEFCGWTRQLLSRAYKNETHSSG FQFQGDFAGANGEIERPPVYLGQENQKVAGDEKAMLTCGTESAFSGIPSLGEFRSGNDSFTGQEDESWGAEKAKSGTGFSCTYEQFQQFDSVFSKFMAVA REFFLPNEKHRFGLVSEQSLLSYLGIGDPGSWAVMLACNGCQTPSRILKNDDDIKTTLQLDKSVVIELEGNGEDADPTFPSNKPSVVLFVDRLSDLSEMR RKSREALHQFRDLAFHHQLPDSTRHQNDDRSESSYNQKPQKLHVLSSGHPALKLSSSAQRVNLKDKMSIMVVNDAKHALLENVQVDFQGKSLLEILNFVV QQKKEATLSSVAKEAGFQLLSQDQSIKPDLLPTDGEVEATHDSSKSSKLSPTTRSDNWDKDLALEERSSYVGSPQVVEKSAYVVTSDDPIKLDKLLSDVE VSVLETMKLQPELYPSVGTSSEELEFGRFHGSFLFSDGNYRLLTALTGETRIPSLVIMDPASQQHYVLPGNIDFSYATIESFVDRFLNKTLVPFQLSESE PASSREGPYPPFVNQNFHEVDSIPRVTAHSFHEMVIGFNKSDNENTAGAWNEDVLVLFSNIWCGFCQRMDLVVREVFRAIKGCMNVLKIGSSIRDPIFSC SSEVKFPKIFLMDCTLNDCSLILRSMGTRDVYPALLLFPAEVKVAIPYEGDATVHKIIEFIVNHSSDSEHLTNENGTLRTVFGKRGTVEKLVKDPSVTTK LAKDAYVEPQEVILEHRATEKAVTYSGTGSITSSQPQVVVGSILTATEKITSQPFDNSQVIVVAADEKEGFQGLIYNKPLGWESVRSLEEGLKVLKEAPL SFGGPLVISGMPLAALTREAIEDDDDELPEVAPGVYFLNQQATLDEIEAIRAGNQTVSDYWFFLGFSSWTWEQLFNEIAAGSWDVNERGIEYLDWPAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19780			unknown protein		Lus10013425 [exp]	0	1
AT3G19780			unknown protein		Lus10040970 [exp]	1.0	0.8603
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10038006 [exp]	11.8	0.7491
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	11.9	0.7596
AT5G12400			DNA binding;zinc ion binding;D...		Lus10014918 [exp]	12.0	0.7494
AT3G23900			RNA recognition motif (RRM)-co...		Lus10032590 [exp]	13.2	0.7371
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10020155 [exp]	13.8	0.7238
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	15.3	0.7048
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	18.5	0.7239
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	20.6	0.7528
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10005501 [exp]	22.6	0.7133

Compare expression of checked genes

Lus10013425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.