Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18620 391 / 3e-136 DHHC-type zinc finger family protein (.1) AT3G56930 67 / 3e-12 DHHC-type zinc finger family protein (.1.2) AT5G04270 64 / 2e-11 DHHC-type zinc finger family protein (.1) AT4G22750 64 / 4e-11 DHHC-type zinc finger family protein (.1.2) AT5G50020 63 / 7e-11 DHHC-type zinc finger family protein (.1.2) AT4G22753 63 / 1e-10 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT3G26935 63 / 1e-10 DHHC-type zinc finger family protein (.1) AT4G24630 61 / 3e-10 DHHC-type zinc finger family protein (.1) AT3G09320 60 / 4e-10 DHHC-type zinc finger family protein (.1) AT2G40990 61 / 6e-10 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012096 [exp] 73 / 6e-14 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 72 / 2e-13 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10024377 [exp] 69 / 6e-13 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 69 / 7e-13 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 64 / 2e-11 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 64 / 3e-11 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10033527 [exp] 64 / 5e-11 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 64 / 6e-11 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 63 / 1e-10 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070600 [exp] 410 / 5e-144 AT3G18620 399 / 3e-139 DHHC-type zinc finger family protein (.1) Potri.006G027500 [exp] 67 / 4e-12 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 66 / 6e-12 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 66 / 9e-12 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.016G025100 [exp] 66 / 1e-11 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.001G070100 [exp] 66 / 1e-11 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.016G025200 [exp] 66 / 1e-11 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 65 / 1e-11 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 65 / 2e-11 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.006G087400 [exp] 62 / 6e-11 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10013426 pacid=23155095 polypeptide=Lus10013426 locus=Lus10013426.g ID=Lus10013426.BGIv1.0 annot-version=v1.0 ATGAATGCCATGTTTTCCCTTGCAACACAGGAGCAATTTGTGACAACAGTCTCAGAGGATCATGAAACATCTTGCTGGGGCTGTGGTTTACGCCTGGTTC TTCCATCCTATGCACCGGTTTTCAAGTGTGGTTGGTGTGGAGCTGTGACTAATCAAAATGATGGGAAACGTGAAAATAAATGGTTGCGGTGGAAACGCAT TCGTGACCGGTGCTTCGTATGTGTCCTCATTGGGTTCATGCTCGTAGTAATATGTGCTGGCGTGTGGGCAGTGCATCCTATTATTTTCAGAATCAGTATG GGCTATGGTACTATTCACTCGTTCATTACTGCTGTCTTGTCAGTGACTACCCTTTCAACATTTAGCCTTGCTGCCTTTTGTTGTGCTGGAAAACCTCCAA TCATACATTGGGGTAGCTATCCAGTTGTAGGGAAAGGTCACCTGGAAAACTACACCTTCTGTCATGATTGTTTAAGGCCCAAATCACCCAGAAGTCATCA TTGTCGCTCTTGTGGAATGTGCATCTTGGACATGGATCACCACTGCCCTTTCATAGGAAACTGTGTGGGTGCAGCAAATCACCGGCACTTCATTTTGTTC CTCATATCAGCAGTGTGCAGTACGCTATACGTCGCAACAGTGTGTGCTTATGTAGGATGTCAATTATGGCCGCCATTAACGTACAGTTCCATAGGGCCTT GGAGCGGGTTGAACCGCGAGGTGGCTTGGAGAGCATCACGAGAGATCATTCTGGCGGTGCTGAACTCGGCTTTGCTTCTATCAGCAAGAGGACTTGTCGT GGTTTATCTATTCTTTTCGAGTGTTTCGGTGCAGATTGGGTTGAGCGTGCTTCTTTGGCAGCAGCTTTCTTACATATACGAAGGGAAGACTTATTTAAGC CACTTAAGCTCTCAGGGAGGAAACGAGGTTGGAGACAGAGACTGGAAGAACATTCTACGTTTCTTCGGGTGCCCATATTCAGTGTCGAAATACTTACCCA AAGTCCGGAATTCCCAGAAGCGGCACAAGAAATGA
AA sequence Show only first row Show all	>Lus10013426 pacid=23155095 polypeptide=Lus10013426 locus=Lus10013426.g ID=Lus10013426.BGIv1.0 annot-version=v1.0 MNAMFSLATQEQFVTTVSEDHETSCWGCGLRLVLPSYAPVFKCGWCGAVTNQNDGKRENKWLRWKRIRDRCFVCVLIGFMLVVICAGVWAVHPIIFRISM GYGTIHSFITAVLSVTTLSTFSLAAFCCAGKPPIIHWGSYPVVGKGHLENYTFCHDCLRPKSPRSHHCRSCGMCILDMDHHCPFIGNCVGAANHRHFILF LISAVCSTLYVATVCAYVGCQLWPPLTYSSIGPWSGLNREVAWRASREIILAVLNSALLLSARGLVVVYLFFSSVSVQIGLSVLLWQQLSYIYEGKTYLS HLSSQGGNEVGDRDWKNILRFFGCPYSVSKYLPKVRNSQKRHKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	0	1
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	1.4	0.9526
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10039381 [exp]	1.7	0.9492
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	2.8	0.9486
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	3.2	0.9516
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10025884 [exp]	3.9	0.9458
AT3G48140			B12D protein (.1)		Lus10042151 [exp]	5.3	0.9383
AT3G48140			B12D protein (.1)		Lus10004241 [exp]	5.7	0.9365
AT5G58740			HSP20-like chaperones superfam...		Lus10018234 [exp]	7.1	0.9349
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10025696 [exp]	7.4	0.9401
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10013287 [exp]	7.5	0.9429

Compare expression of checked genes

Lus10013426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.