Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10280 449 / 7e-157 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 332 / 2e-111 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 319 / 3e-106 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 318 / 1e-105 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 318 / 2e-105 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G68390 309 / 3e-102 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 293 / 1e-95 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 286 / 2e-93 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 286 / 5e-93 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 266 / 2e-82 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040972 [exp] 686 / 0 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 501 / 1e-177 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 501 / 2e-177 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 322 / 4e-107 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 322 / 4e-107 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 326 / 2e-106 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 321 / 3e-106 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 320 / 5e-106 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 314 / 3e-104 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G001700 [exp] 473 / 2e-166 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 447 / 1e-156 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 332 / 2e-111 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 324 / 7e-108 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 321 / 4e-107 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 321 / 4e-107 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 320 / 1e-106 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 314 / 3e-104 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 310 / 2e-102 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 306 / 2e-101 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10013427 pacid=23155082 polypeptide=Lus10013427 locus=Lus10013427.g ID=Lus10013427.BGIv1.0 annot-version=v1.0 ATGGCGAGGCTTAGAGAAGATGGGTCATCAGAAATTGCCCATCTGGGATTGCTCAAACTGCTCAAAGTCTTGTCATTCTTACTCATATTCGCTGCTGGGA TCATTCTTGGGCTGTTGGCTAGCTCTCACGTCAACACTCTCTTCAATTCACAAAGGGATTTGTTTTATGATGTCACAACAACAACTACTACTACAAGTAT TTTATCTGATGTTAACAATAGCAGCACCAATTGCAACAGCAGCAGCAGCAGCAGCTCCCCAAATGATAGCGTTGTGCAGCCTTGCAACTGCAAGTCTTGT GATGATGGAGATGTTGATTGTTTGAGTATGGACACTTTTCTTCATCCCAGACACTTGGCTCATGGAATGAATGATGAAGAGATTTTCTGGAGGGCTTCTT TGGTCCCTACAAAGAGAGACTATCCTTTTGATAGATTGCCTAAGGTTGCTTTCATGTTCTTGACTAGAGGCCCTATGCCTTTGTTGCTTCTTTGGGAGCG CTTCTTCAAGGATCATCACGACTTCTTCACTATTTATGTTCATACCGATCCTGGTTATGTGCTCAATGTTTCCACTGATTCTCCCTTCTATGGAAGACAG ATTCCAAGCCAGCAAGTTGAATGGGGAACTGTCTCACTGCTCGATGCAGAGAGACGCCTCCTAGCCAATGCTCTTCTTGAATTCTCAAACGAGCGGTTCC TTCTCTTCTCAGAGAGCTGCATCCCAATCTACAATTTCCCAACAGTTTACAACTACCTCATCCATTCCCAACAAAGCTTCGTGGAGTCCTATGATGACCC TTCTCGTTACGGGCGTGGCAGGTACAGCAGGAAGATGCTTCCAAACATATGGGTCAAACAATGGAGGAAAGGGTCCCAGTGGTTCGAGATGCAGCGAGCC TTAGCTTCTTACATAGTGTCGGATACCAAATACTACACTCTATTCAAGAAGCACTGCACGCCAGCTTGCTACCCCGACGAGCATTTCCTTCCAACGTTCA TCCACATGTTCCATGGATCGCTGAGTGCTAACAGGACCTTGACATGGGTGGATTGGTCGTTGGGAGGTCCGCATCCAGCAACTTATGGTGCAGTTAATAT CACGGAGAGTTTCATACAGTCGATTCGGATGAATAAAACGCTGTGTTCGTATAATACAGGAACCACACCTATTTGTCATCTGTTTGCTAGAAAGTTTGAC GCAAGTGCTTTGGAACCTTTGCTTAACCTCACTTCCAGGGTAATGGAGTTCTGA
AA sequence Show only first row Show all	>Lus10013427 pacid=23155082 polypeptide=Lus10013427 locus=Lus10013427.g ID=Lus10013427.BGIv1.0 annot-version=v1.0 MARLREDGSSEIAHLGLLKLLKVLSFLLIFAAGIILGLLASSHVNTLFNSQRDLFYDVTTTTTTTSILSDVNNSSTNCNSSSSSSSPNDSVVQPCNCKSC DDGDVDCLSMDTFLHPRHLAHGMNDEEIFWRASLVPTKRDYPFDRLPKVAFMFLTRGPMPLLLLWERFFKDHHDFFTIYVHTDPGYVLNVSTDSPFYGRQ IPSQQVEWGTVSLLDAERRLLANALLEFSNERFLLFSESCIPIYNFPTVYNYLIHSQQSFVESYDDPSRYGRGRYSRKMLPNIWVKQWRKGSQWFEMQRA LASYIVSDTKYYTLFKKHCTPACYPDEHFLPTFIHMFHGSLSANRTLTWVDWSLGGPHPATYGAVNITESFIQSIRMNKTLCSYNTGTTPICHLFARKFD ASALEPLLNLTSRVMEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10013427 [exp]	0	1
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	1.4	0.8813
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	2.0	0.8560
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	3.5	0.8473
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	3.9	0.8557
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	6.7	0.8426
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	7.4	0.8029
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10001725 [exp]	8.9	0.8033
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10039295 [exp]	9.0	0.8055
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	9.2	0.8027
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	11.0	0.8252

Compare expression of checked genes

Lus10013427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.