Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31220 326 / 3e-112 Formyl transferase (.1) AT5G47435 67 / 1e-12 formyltetrahydrofolate deformylase, putative (.1.2) AT4G17360 66 / 6e-12 Formyl transferase (.1) AT1G66520 47 / 7e-06 PDE194 pigment defective 194, formyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040974 [exp] 583 / 0 AT1G31220 327 / 3e-112 Formyl transferase (.1) Lus10028958 [exp] 65 / 9e-12 AT5G47435 498 / 3e-179 formyltetrahydrofolate deformylase, putative (.1.2) Lus10010978 [exp] 50 / 1e-06 AT1G66520 496 / 2e-177 pigment defective 194, formyltransferase, putative (.1) Lus10000450 [exp] 49 / 3e-06 AT1G66520 510 / 0.0 pigment defective 194, formyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G107500 [exp] 384 / 1e-134 AT1G31220 337 / 1e-116 Formyl transferase (.1) Potri.003G078000 [exp] 66 / 3e-12 AT5G47435 484 / 7e-174 formyltetrahydrofolate deformylase, putative (.1.2) Potri.001G156600 [exp] 66 / 4e-12 AT5G47435 476 / 2e-170 formyltetrahydrofolate deformylase, putative (.1.2) Potri.017G123300 [exp] 53 / 9e-08 AT1G66520 516 / 0.0 pigment defective 194, formyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00551 [flax] [poplar] Formyl_trans_N Formyl transferase
Representative CDS sequence Show only first row Show all	>Lus10013428 pacid=23155164 polypeptide=Lus10013428 locus=Lus10013428.g ID=Lus10013428.BGIv1.0 annot-version=v1.0 ATGGATTCCCGCTGCTTCCTCTCTGATTTCTGCTCCAATTCAGCTTACCCGTCACTCAAGACCCTCCAAAACACCTTCTTTCGCTCTACTCCATTCCACA GCTGTTGCCTTTCCTTCTCCACCCGATTTTCAGCCTCTTCGCAGATTGCTGTCAGTAACCGGTCCTGTAAAAGATTAGAGTGCGTAAATAGCTTTAGGGC GAATGACGAATTAATCAAGGGTGCTGCAGCTTCTTCTGAGGAGAAGAAACCTTTGGTTGCTAGGAAGAGGTTAGCTGTTTTCGTATCTGGCGGAGGCTCC AATTTCAAATCCATTCATCAAGCTTGTCTTGACGGATTGGTTCATGGGGACGTTGTTACTTTGGTCACCAATAAAACTGATTGTGGAGGCGCTAAGTATG CAAGAAACAAAGAGATCCCAGTTCTTCAAATCCCCAGAACCAAAGATGGAGCGGATGCATTGTCCCCAACTGAACTTGTGGATGCTCTCAGGATTTTGGA AGTTGACTTCGTTATACTAGCTGGGTTTCTAAAACTTATACCAGTCGAGTTGATCCGGGCTTATCCTCGAGCAATACTAAATATCCATCCATCACTTCTT CCTGCTTTCGGGGGGAAAGGGTATTACGGAATGAAGGTGCATAAAGCGGTCATTTGCTCCGGTGCAAGGTACTCGGGGGCAACGATTCACTTTGTGGATG AACATTATGACACGGGGCGCATCCTTGCTCAAAGGGTGGTGCCTGTACTTGCAACTGATACTCCAGAGGACCTAGCAGCCAGAGTTCTCCATGAGGAGCA CAGGCTATATAAAGAAGTGGTAGCGGCATTGTGTGAAGGAAGGATAGTGTGGAGAGAAGATGGTGTTCCTCTGGTTCAAAGTAGAGAAGATCCCAGCCAT TTGTGCTAA
AA sequence Show only first row Show all	>Lus10013428 pacid=23155164 polypeptide=Lus10013428 locus=Lus10013428.g ID=Lus10013428.BGIv1.0 annot-version=v1.0 MDSRCFLSDFCSNSAYPSLKTLQNTFFRSTPFHSCCLSFSTRFSASSQIAVSNRSCKRLECVNSFRANDELIKGAAASSEEKKPLVARKRLAVFVSGGGS NFKSIHQACLDGLVHGDVVTLVTNKTDCGGAKYARNKEIPVLQIPRTKDGADALSPTELVDALRILEVDFVILAGFLKLIPVELIRAYPRAILNIHPSLL PAFGGKGYYGMKVHKAVICSGARYSGATIHFVDEHYDTGRILAQRVVPVLATDTPEDLAARVLHEEHRLYKEVVAALCEGRIVWREDGVPLVQSREDPSH LC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	0	1
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10042891 [exp]	3.0	0.9207
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10020738 [exp]	3.2	0.9037
AT5G38720			unknown protein		Lus10023232 [exp]	5.7	0.8898
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	6.0	0.8644
AT1G80930			MIF4G domain-containing protei...		Lus10003392 [exp]	9.9	0.8636
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Lus10011877 [exp]	10.4	0.8668
AT1G31220			Formyl transferase (.1)		Lus10040974 [exp]	11.7	0.8046
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	12.7	0.8697
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	12.8	0.8734
AT2G32170			S-adenosyl-L-methionine-depend...		Lus10035424 [exp]	13.9	0.8285

Compare expression of checked genes

Lus10013428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.