Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50120 593 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040977 [exp] 977 / 0 AT1G50120 634 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G071000 [exp] 709 / 0 AT1G50120 652 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08737 [flax] [poplar] Rgp1 Rgp1
Representative CDS sequence Show only first row Show all	>Lus10013430 pacid=23155098 polypeptide=Lus10013430 locus=Lus10013430.g ID=Lus10013430.BGIv1.0 annot-version=v1.0 ATGTCCAAACCTATCAGATTGCATTGCTCCATCATGTCAACCAATCCAAACCCATCAAAGAAACAAGACAAAAAGGGCGAGAAAGTCCCAAACCTTATCC GGAATCGAGAATTGCTGGAAAATAAAATCTTAATCAGTTCTGCTCCATTGGGGAACAAAGCAATATTGATAGGAAGAAAGAAACGAGGGAAAGCAAGGGA GGACGAAGGCAGAGAAGGGGCGAAGGTATCGGGTGACAAAGACTCAGAAAGGGAAGAGCTTTATTTGGGGACGTGGGTGGAGTTCGTGGCCGCCGCGACC AATATCTGCGTTACACCGCCTGTCGTTTCGCCTAGTTTGGTTCCACTTTTTTTGTTCACCTTCTCTGGACTAGTTGAGAGTGGTCGACCCATATTCTCCA AAGAGGCCCGACTGGGGCCCAACCACGGAACTCGGAGTTTCTCCATTGGGCAAAATCGTTTTCGTTACGTCGACTGTCAACTGTCAACGTTCAGAAAAAA AATTAAATGGCGCGTCGGTTTTATTGTGCCACTCTCCCATCATCACATTAACGAACATCTCTCGGATTCGAGTTCCCAATTTCCACCGCATGTCGCAAAT CTCCATCAGATTCTTCCAGTGCGCGGATCTGAATCCTCTCCATTCCAATACTTCCGTTCAATCCTAACCGGAAGACTTGCGCCGGCTTCGTCCCCGAAAC ACTGGATCTTCCTTCCCCTGCGCCGAGATCCGGATCCCGAGCTTCGGCAGCTCCTCCACCTTTTTCGAGGTTCGGACAAGGAGAGAAGTTCTGTTGATGA CCTGAAAAGTGATCTTGTGCCGACCTTCAAACTGCAAACTGATAGAGATGTATATAGGCCTGGTGATTCCGTTTTTATTACTATTGAGATAAATAATCCC AATCATGGGGCTGCTCAAGACGTCCCTGTAGCTCCCCTGTTAATTGAAAGGCTTGGCTTCGAAATTAAAGGCATGGAGAAGTTGGATAACCAGTGGTTTG CTACTCCGAAGGAAGCCTTCGGATCCAGACAGAGAAGAGGTGAACATATTTTTATGGATTGCTCAACATCAGCTCTTGTTTCTAACCATGTCGTATCATC TGGTGCCACCAAAACATATGTAGTGCGCATAGTTTTGCCCACCATCATACCTCCCTCATACAGGGGTGCTACCATCCGGTATATGTACTATGTTAAAAGT GTTCTATCTGGACGATGGCTGATACTGGACAATGGCCACTCTCATAAGGAATCAAGGAAGGATCTTATTTTGCTAGAAGCTCGTAATCCGTTGCAAGTAT GGGTAACCGAGAAAAACAATGGACTGATATCGGAAGAAAGCCCAAATGATGGGATTGTGCCTGCCATTACTATCCAGTTGGATATGCATTGGAGAGAAAT GGATGGTGATTCTGAATGGGCCAGAGCAAATGAAGTAGAAGATGCGCTTGAGGATGGCTATGAAAGCTCAAAGGATGAAGTGTCGTCTATTTCTTCCTAC AATCATGCCCGAGAAAGTATACACAAACCATTCGGAAGCACCTTATCGCTGCGGTCTGCTTCAGCACGGTCTCTTACTCTGCAACTTCCTCGACTTTCTG TGGCTGAAGTTCTGTATGACCCTGCCGCGGATAACTCATCTCGGGACAAGACTTCTGAAAACCTCTCCCCGACATTGCTTCAGAGTACAACAAAGCCCCA TTTTGAAGATGAGAATGCAGGAGTGTCTTCTACAACTGCAGCAACCACGCATGACCCTGCTCCATCAGAAGGCTTTGGTCGAGGAAGGTCATATAACATC AGGATGGATGACCGTGTGCTTCTCAGATTTTCCCCTAGGAACTCTGACTCAACCTACTACTTCAGTGATATGATTGGTGGAACACTTACCTTTTTCCATG AAGAAGGAGCTAGAAGGTGCCTGGAGGTCTCAATAACGTTGGAAACTTCGGAGACTATAAATCGGCGATTTGTGCATCCTTCTCGCAAGAGTTCCCCAAC AATAACTAAGGTCCAAAGTGATCATCATGAGGTTGTTGCAGATTTGCAGCAGACTAGCTTTCTTTTCTCAATCCCCATGGACGGACCCATGTCATTTTCC ACTCCCTGTGTCTCTGTACAATGGGCTTTACGATTTGAATTTTTCACCACTCCAAAGAATATTGACTGGTCAAGGTATGAGCATCCACTTCTGATAGAAG CAAGAGACAAAAGTGAGTGGGTTCTCCCAATTACAGTGCACGCAACTCCACCGGTGGCTCAAGCAGCCCACGGTCGGAACGAGAATATGTTATCGTTGGA ACCGCTGTGGGTTCATACGTGA
AA sequence Show only first row Show all	>Lus10013430 pacid=23155098 polypeptide=Lus10013430 locus=Lus10013430.g ID=Lus10013430.BGIv1.0 annot-version=v1.0 MSKPIRLHCSIMSTNPNPSKKQDKKGEKVPNLIRNRELLENKILISSAPLGNKAILIGRKKRGKAREDEGREGAKVSGDKDSEREELYLGTWVEFVAAAT NICVTPPVVSPSLVPLFLFTFSGLVESGRPIFSKEARLGPNHGTRSFSIGQNRFRYVDCQLSTFRKKIKWRVGFIVPLSHHHINEHLSDSSSQFPPHVAN LHQILPVRGSESSPFQYFRSILTGRLAPASSPKHWIFLPLRRDPDPELRQLLHLFRGSDKERSSVDDLKSDLVPTFKLQTDRDVYRPGDSVFITIEINNP NHGAAQDVPVAPLLIERLGFEIKGMEKLDNQWFATPKEAFGSRQRRGEHIFMDCSTSALVSNHVVSSGATKTYVVRIVLPTIIPPSYRGATIRYMYYVKS VLSGRWLILDNGHSHKESRKDLILLEARNPLQVWVTEKNNGLISEESPNDGIVPAITIQLDMHWREMDGDSEWARANEVEDALEDGYESSKDEVSSISSY NHARESIHKPFGSTLSLRSASARSLTLQLPRLSVAEVLYDPAADNSSRDKTSENLSPTLLQSTTKPHFEDENAGVSSTTAATTHDPAPSEGFGRGRSYNI RMDDRVLLRFSPRNSDSTYYFSDMIGGTLTFFHEEGARRCLEVSITLETSETINRRFVHPSRKSSPTITKVQSDHHEVVADLQQTSFLFSIPMDGPMSFS TPCVSVQWALRFEFFTTPKNIDWSRYEHPLLIEARDKSEWVLPITVHATPPVAQAAHGRNENMLSLEPLWVHT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50120			unknown protein		Lus10013430 [exp]	0	1
AT3G28430			unknown protein		Lus10018448 [exp]	1.0	0.8310
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	4.6	0.7797
AT2G16405			Transducin/WD40 repeat-like su...		Lus10028800 [exp]	5.7	0.8115
AT1G15780			unknown protein		Lus10025452 [exp]	6.7	0.7615
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	6.9	0.7495
AT1G15780			unknown protein		Lus10015323 [exp]	8.1	0.7678
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10030492 [exp]	9.9	0.7662
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10042006 [exp]	13.5	0.7451
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10013286 [exp]	16.6	0.7545
AT1G20670			DNA-binding bromodomain-contai...		Lus10013220 [exp]	16.9	0.7190

Compare expression of checked genes

Lus10013430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.