Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30200 92 / 1e-21 F-box family protein (.1.2) AT5G46170 89 / 2e-20 F-box family protein (.1) AT4G18380 88 / 4e-20 F-box family protein (.1.2) AT1G78100 66 / 1e-12 AUF1 auxin up-regulated f-box protein 1, F-box family protein (.1) AT1G22220 53 / 5e-08 AUF2 auxin up-regulated f-box protein 2, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040978 [exp] 137 / 5e-41 AT4G18380 44 / 7e-06 F-box family protein (.1.2) Lus10038511 [exp] 79 / 6e-17 AT5G46170 453 / 5e-161 F-box family protein (.1) Lus10023298 [exp] 78 / 3e-16 AT5G46170 505 / 4e-179 F-box family protein (.1) Lus10036451 [exp] 51 / 3e-07 AT1G78100 253 / 2e-82 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10041123 [exp] 49 / 1e-06 AT1G78100 250 / 2e-81 auxin up-regulated f-box protein 1, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047600 [exp] 96 / 5e-23 AT4G18380 197 / 4e-60 F-box family protein (.1.2) Potri.011G082900 [exp] 81 / 1e-17 AT5G46170 488 / 9e-173 F-box family protein (.1) Potri.004G065900 [exp] 81 / 1e-17 AT5G46170 499 / 3e-177 F-box family protein (.1) Potri.002G094600 [exp] 66 / 2e-12 AT1G78100 292 / 9e-98 auxin up-regulated f-box protein 1, F-box family protein (.1) Potri.005G166500 [exp] 53 / 5e-08 AT1G22220 295 / 1e-99 auxin up-regulated f-box protein 2, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013431 pacid=23155134 polypeptide=Lus10013431 locus=Lus10013431.g ID=Lus10013431.BGIv1.0 annot-version=v1.0 ATGTTGAATGTGGAGTCAATACAAGCATCTCAAAGAGAAACACGCGAGGAGCAATACCAAGCCCCACATTCGCTCATCAAGTGGAATGCAGAGTTCGGAA CCGAGCTCGATAGCTGCCTCATTCTCGGAGCTACTTCTCTCCGGAAATGGATCATTAATACCACTACTAATACTGATTGCGTTCTGCAGATCAGCAAAGA AGCTGGAGACGAGAATATTATTAATCTATCGGAGGAGGAGCTGAATTTACGAATTGTTTGGACGAATTTGTCCCCGGTGGCCGCATCCGCCAGGCATTCT CTGGTGAATGGGATTGTGCCTCGTGGTGGTGATCAACATCCTGCTCTGGAGAATGTCATCCTCAGCGACGTCGGCGGACAGGGGAAGCTTCGAATGGGAA CCCAACAGATTCGTGAATTGAGAAGGAGCATTAATGGTAATGATGATGATAATAATAGCGTTAAGAATAATTCTGTAGAGGGAATTGGGAGAACAATTAC CGTCCCAGATTTGAGGGTGAGGCTTTGGTACTTGCCGGTGATGGAGCTGAAGGGAACAGAGTATTCCACGGAAGGGGCAACACTAATTCGCATCCGACCT GCCGCAGCGGAGGACGAGCGGATATTATTATGGGAGAGGAATGATGGAGAGGACTTTCTTGGTCTGCGAGTTGACGGAGAGGAGATTTCCGACGAAGACA AGGTATGGCAGGAAGCTACAGGGGGGTTATTAATATGA
AA sequence Show only first row Show all	>Lus10013431 pacid=23155134 polypeptide=Lus10013431 locus=Lus10013431.g ID=Lus10013431.BGIv1.0 annot-version=v1.0 MLNVESIQASQRETREEQYQAPHSLIKWNAEFGTELDSCLILGATSLRKWIINTTTNTDCVLQISKEAGDENIINLSEEELNLRIVWTNLSPVAASARHS LVNGIVPRGGDQHPALENVILSDVGGQGKLRMGTQQIRELRRSINGNDDDNNSVKNNSVEGIGRTITVPDLRVRLWYLPVMELKGTEYSTEGATLIRIRP AAAEDERILLWERNDGEDFLGLRVDGEEISDEDKVWQEATGGLLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	0	1
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	2.2	0.8816
					Lus10040066 [exp]	5.0	0.8917
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	5.3	0.8692
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10015338 [exp]	6.5	0.8585
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10013224 [exp]	7.6	0.8271
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10027040 [exp]	7.7	0.8263
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10027796 [exp]	8.1	0.8482
					Lus10039759 [exp]	8.2	0.8874
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040327 [exp]	10.4	0.8773
AT4G09740		ATGH9B14	glycosyl hydrolase 9B14 (.1)		Lus10017525 [exp]	12.5	0.8129

Compare expression of checked genes

Lus10013431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.