Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23150 449 / 4e-134 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) AT5G08230 367 / 3e-105 Tudor/PWWP/MBT domain-containing protein (.1) AT3G63070 239 / 1e-63 Tudor/PWWP/MBT domain-containing protein (.1) AT2G48160 229 / 2e-60 Tudor/PWWP/MBT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040980 [exp] 1869 / 0 AT5G23150 480 / 1e-145 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10017398 [exp] 978 / 0 AT5G23150 432 / 5e-128 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10010197 [exp] 974 / 0 AT5G23150 445 / 2e-132 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10028004 [exp] 190 / 1e-48 AT2G48160 371 / 5e-109 Tudor/PWWP/MBT domain-containing protein (.1) Lus10042690 [exp] 166 / 3e-41 AT2G48160 282 / 1e-77 Tudor/PWWP/MBT domain-containing protein (.1) Lus10032141 [exp] 47 / 0.0002 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10014546 [exp] 45 / 0.0004 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092700 [exp] 831 / 0 AT5G23150 478 / 2e-144 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.007G071600 [exp] 796 / 0 AT5G23150 485 / 1e-146 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.014G138700 [exp] 250 / 4e-67 AT3G63070 400 / 5e-117 Tudor/PWWP/MBT domain-containing protein (.1) Potri.004G130600 [exp] 49 / 4e-05 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Lus10013433 pacid=23155071 polypeptide=Lus10013433 locus=Lus10013433.g ID=Lus10013433.BGIv1.0 annot-version=v1.0 ATGGCTCCTGGGCGTAAAAGGGGAGCAAACAAGGCCAAAGCCAAGAGTCAGCTCAGTTTGGGCGACCTTGTACTTGCTAAAGTTAAAGGCTTCCCTTATT GGCCTGCCAAGATATGTCCGCCAGAAGACTGGGAGAAGGTACCGGACCCTAAGAAACATTTCGTTTACTTCTTTGGTACTCAAGAAATAGCTTTTGTTGC TCCTTCTGATATCCAAGTATTCACAAATGAAACAAAGAACAAGCTATGTTCTAAGTGTCAAGGTAAGAATAATAGCTTTACTCAAGCAGTAAAGGAAATA TGTGCAGAATTCGAGAAGTTACAGAATGAAAAGTCAAGTGCGCTGGGTGAGGCACCCTCCGCTGATGGAGCAGAAGACAGAGGAGAGGTTCACTCGAATG ATGGCATCGCTGGATTGAATGGAGAAGCATCAGAAGATGCAGGTGATGTTAGATACAAGTCAGATAATTGCTCTAGACAGAAGGGTGAGGCTGACTGTGA AGATACAAAGCCTGTCGTGTCATGTGATGCTAGAGACAGTCCAGTCGAGGCTACATCTTTTGACAAGAAATCTGATGATGCTCAGCTGCAGGATATGGTA TCTTGTCCTAGGATCTCCAAGGATGGGAAAGATGAAACTTCTAGTGTTGGTGGAAAGCAGGAGGTGGACGTTAGCCAGAATGGTAATAAATCCGAGATTG ATAATGGTCGAGTTAGGAAGATAGATGATGCAGTAGAAGGGCATAGAAGCATGAGCTCAGATATGATGGAAATGGAAGACGTGAAACCTGGTGTTTCATC ACGTAACAAGAAGCAGTTGAAAGACAAAGGGAAAGGAAAAACTCCTTCTGCTGCAATTGATGATGGGAAGAAAGGAAAGGAGATGCAAAAAGCTAAAAGA AATTCAAAGGCAGCTGATGGAATCTGTGTAAGCCTAGTTGATAAAAAGAATAAGGGCACTAAATCTGGATGTGGGAAGTCCAAGGTTGACAGAACTAAGA CTTCTCCGGCTAAAACAACGAAGTCCGGTGATGTGGAATCCCCTGAAGAATCTCTAAACAATGCAAACGAAAGTACTTCTGCTGAAACAGGAAAAGATAA GTTTCACGCATTACCCACATCAGGTAAAGTAAAATTGGAGGCATCTTCGTCAACAGCTATGGCAAAATCTGCTGCTTCAGCACAGACTAATAAAGTCAAA TCTCATGCGTCTCGCCAGTTGGATAAAGTTAAATCTAGTTCTTCTAAACCCGTCAATAAACTTAAGTCAGATTCCTCTGCTCAGATGAAGAAGGTTACAG CTGGTACAGGTAAAGGAAAAATGGATGTTAAACAAACAAGTAAGGTACACGATACTTCTGTTGAGGAGGATGTCTTGCCAGTGTCGAAACGTCGTCGACG AGCAATCGAGGCAATGACTGATTCTGCCCATAATTCAAATGATCAAAGGGAAAGGAGTCCTGATACGAAGAATGACTTTGCTTCTAGTAACTCTAAAGTT TATGCCAATTTGAAAAGGCGAAGGGCTGTGTGCCTCTATGATGAGGATGAAGAGCGTAAAACACCACTTCATGGGGGATCTGCCAAAAGTGTTAAAGCTC CATATGCTGTCTCTGCGGCTTCCAAGAACCGGGATCCACAAGATGGATCTGCGGCAAACTCCCAGTCAAAAGCGAGGGAATCTACTAGACACCATGCCAG TTTGAAGGAGGCATCCTTTCACTCACAAAAGAATTTGCTTTCTCCTGAGGCTCCAAATGTGAAGACTCCCAGTGCTTCTGTTTCACAGAGTCCAAGAGTG GAGGAAGCGCAGGTACTAGCCAAAGAGACAACTACTGTATTGACATCTCCGAAGAACTCTCCTCAGCCTGCTCCTCCAAAAGCAGTCGTGGAGAAACATA AAACAGGTAACAATTCTGTAAAGACATCTTCTGGTGCTCAAAAGAACGCCCAGGCGTCTTCTAATAAGCCCTCAGGCTTAGTTCTCGATTGTGGAAAAGC TTCCCAAAGTCATGTGGCAGTTCAAAGTAACAGACTATCTCTTTCGACAGAGAGACCTAAAAGTACTCCCAAAGTGTCTTCAACTATGACCAATGACGCC ATGTTGCTGGAAACTCAGATGGATATTGAAGCTGCTGCAGATGATGCAAGCTATTCATTGGTTGATTTTAAGACTTCAGATTCTTCTGTATCTTTGAAGC ACCTTATTGCTGCCGCACAAGCAAAAAGAAAAGAAGCTCATTCCCAACATTTCTCTCTCAGAAACTCCAGTTACGCTCTTCTGTCCATCAATGATTCTCA TGGATGGACTCCTAGTCCGACCTTTGTTCATCCTTTGCCATCTAGCATTTCAAATGTAACGCAAGCCGATGCATCAGGGCTCCATCCTCACCCGGAAGTT GCTTCTCCGTCTACTCAGAATCATCCTTCAGACTCTCAGAATCAAACGGAAAGTGTAGAGGCTGAAGAACGGAGGGTTAGTTCTGGACATAGAGCTCCTG GAGGCTCACTGAGTGGTGGCACGGAAGCTGCTGTTACACGTGATGCTTTTGAAGGGATGATAGAGACTTTGTCTAGGACAAAAGAAAGTATAGCACGTGC AACTCGTCTTGCCATAGACTGTGCTAAGTATGGAATTGCACATGAGGTCGTGGAACTTCTAGTCAGAAAGCTTGAAACTGAACCCAGATCGCATCGGAAA GTGGACCTGTTTTTTCTTGTTGACTCAATTACCCAGTGTTCGCATAACCAGAAAGGCATAGCTGGAGCTTCATATGTACCAACAGTTCAGGCAGCATTAC CACGTCTTCTGACTGCTGCTGTTCCATGTGGAACGGGTGCTCGTGAGAATCGCCGTCAATGTCTCAAGGTGCTAAGGCTATGGCTTGAGCGGAAAATCTT CCCTGAATCTGCATTGAAGCATTTTATGGATGATATTGGGGGTCCTAGTGGTGAAATTTCTTATGGAGTATCCCATAAACGTCCATCCCGTTCTGAGCGG TCTTTAGATGACCCTATCAGAGAAATGGAAGGGATGCTTGTGGACGAGTATGGAAGTAATGCAACGTTTCAGTTACCTGGCTTACTATCAGGGAACATTT TTGAAGATGATGAAGATTTTATAACCGAGTTAGCGAAGGAAGCTGGCGAGTTGTTGATAGTGGCTGAGTCTGATGGCGCCTTAGAAGATTTGGAAACATG TGCTACTCCCAGTGACAGACGTCATTGCATCTTAGAGGATGTTGATGGTGAGCTTGAGATGGAAGATGTATCAGGTCATCATCTTCAAAATGATGAACCT GAAATGATTGTAGAAGAGCATTGCTCCAACAGGGAGTTGGAACCTGCATCAGACAGTTCCGCTGACTCTCCCCTACTTCCAGATGGTTCACCACCGCTGC CTCCTGGTTCTCCTCCTCAGCTTCCGCCTTTACCGCCCACCTCACCCCCTCCATTGCCTCCACCGCCAAGCTTCCCTTCTCAGCTTCCACCCCCGCCACC ACCCCCACCCTTGCCTCCACCTCCACCACCACATATTCCTTCGCAGCTCCCTCCTACATTACCCTCAGGTCCTCATTTGCCTTTGTTGCATCAACACACG CCACCAACTCAACTCTCCCTGCACACTCAGTCTCTGCAGTCACCGCAATTGGGATATCAGCAGGGCAATCAAATGGGTCAAATGGCTAATGCTCCTCATG TGAAGCATCAGCAGTCTCCTTGTTTTCCACCTTCAGCAGTTTGTAACTCCCGGGAAAGTCCAGGATTCAACGCTTCCAGGCATTTGGACTATAGTCATAA TGACATGTATATGAATCCGCAAGCATCACAACATAATCCTCAGTTTCAGCAGGGTAACCCGCCATTTTTACCCAGACCTCTAAATACAATCCATCTACAA GCACCTCCGGGTCATTTTCAGTTCCCAAAGCCGATGATTCAGCAGCATCACCAGCAATCTTATCCCCATCCATATCCTGTGCCGTTGCATCCTGAGGGAC ATAGACGATTTGTTGGTGACGATCAGTGGAGAATGCCCTTGAATGAGTTCAATGCTAATAATCCACATGGTGGATGGAATAGTGGAAGAATGCCGTCAAA TGCGGGGAATTCTATTGGCCAAGAAGGTTTCTTTCGTCCACCAATTGAAAGGCCGTCAGCAAATACTGTTGGTGTTCAATACCCTGCAAATAACAATTTA CCCGGTGCCCCTCCAATTCCAGACTACGTTGCTGCAGGCCCTGGTGTTTCTCCAATGATTCCATGTAGACCTGAAGTGCCCGCGGCAAACTGCTGGAGGC CAGCTTAA
AA sequence Show only first row Show all	>Lus10013433 pacid=23155071 polypeptide=Lus10013433 locus=Lus10013433.g ID=Lus10013433.BGIv1.0 annot-version=v1.0 MAPGRKRGANKAKAKSQLSLGDLVLAKVKGFPYWPAKICPPEDWEKVPDPKKHFVYFFGTQEIAFVAPSDIQVFTNETKNKLCSKCQGKNNSFTQAVKEI CAEFEKLQNEKSSALGEAPSADGAEDRGEVHSNDGIAGLNGEASEDAGDVRYKSDNCSRQKGEADCEDTKPVVSCDARDSPVEATSFDKKSDDAQLQDMV SCPRISKDGKDETSSVGGKQEVDVSQNGNKSEIDNGRVRKIDDAVEGHRSMSSDMMEMEDVKPGVSSRNKKQLKDKGKGKTPSAAIDDGKKGKEMQKAKR NSKAADGICVSLVDKKNKGTKSGCGKSKVDRTKTSPAKTTKSGDVESPEESLNNANESTSAETGKDKFHALPTSGKVKLEASSSTAMAKSAASAQTNKVK SHASRQLDKVKSSSSKPVNKLKSDSSAQMKKVTAGTGKGKMDVKQTSKVHDTSVEEDVLPVSKRRRRAIEAMTDSAHNSNDQRERSPDTKNDFASSNSKV YANLKRRRAVCLYDEDEERKTPLHGGSAKSVKAPYAVSAASKNRDPQDGSAANSQSKARESTRHHASLKEASFHSQKNLLSPEAPNVKTPSASVSQSPRV EEAQVLAKETTTVLTSPKNSPQPAPPKAVVEKHKTGNNSVKTSSGAQKNAQASSNKPSGLVLDCGKASQSHVAVQSNRLSLSTERPKSTPKVSSTMTNDA MLLETQMDIEAAADDASYSLVDFKTSDSSVSLKHLIAAAQAKRKEAHSQHFSLRNSSYALLSINDSHGWTPSPTFVHPLPSSISNVTQADASGLHPHPEV ASPSTQNHPSDSQNQTESVEAEERRVSSGHRAPGGSLSGGTEAAVTRDAFEGMIETLSRTKESIARATRLAIDCAKYGIAHEVVELLVRKLETEPRSHRK VDLFFLVDSITQCSHNQKGIAGASYVPTVQAALPRLLTAAVPCGTGARENRRQCLKVLRLWLERKIFPESALKHFMDDIGGPSGEISYGVSHKRPSRSER SLDDPIREMEGMLVDEYGSNATFQLPGLLSGNIFEDDEDFITELAKEAGELLIVAESDGALEDLETCATPSDRRHCILEDVDGELEMEDVSGHHLQNDEP EMIVEEHCSNRELEPASDSSADSPLLPDGSPPLPPGSPPQLPPLPPTSPPPLPPPPSFPSQLPPPPPPPPLPPPPPPHIPSQLPPTLPSGPHLPLLHQHT PPTQLSLHTQSLQSPQLGYQQGNQMGQMANAPHVKHQQSPCFPPSAVCNSRESPGFNASRHLDYSHNDMYMNPQASQHNPQFQQGNPPFLPRPLNTIHLQ APPGHFQFPKPMIQQHHQQSYPHPYPVPLHPEGHRRFVGDDQWRMPLNEFNANNPHGGWNSGRMPSNAGNSIGQEGFFRPPIERPSANTVGVQYPANNNL PGAPPIPDYVAAGPGVSPMIPCRPEVPAANCWRPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10013433 [exp]	0	1
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10040980 [exp]	1.0	0.9843
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	3.2	0.9181
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	11.3	0.9322
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Lus10019120 [exp]	11.5	0.8996
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10040472 [exp]	11.7	0.9221
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	11.9	0.9324
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10018496 [exp]	14.5	0.9257
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10039707 [exp]	14.9	0.9288
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	15.2	0.9323
AT1G30470			SIT4 phosphatase-associated fa...		Lus10038452 [exp]	16.9	0.8881

Compare expression of checked genes

Lus10013433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.