Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23140 181 / 3e-55 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT1G02560 101 / 2e-24 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT1G66670 99 / 2e-23 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT5G45390 97 / 1e-22 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT4G17040 96 / 3e-22 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) ATCG00670 92 / 5e-22 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1) AT1G11750 88 / 8e-20 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) AT1G12410 87 / 3e-19 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) AT1G09130 79 / 3e-16 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040982 [exp] 244 / 4e-79 AT5G23140 338 / 5e-118 nuclear-encoded CLP protease P7 (.1) Lus10013434 [exp] 208 / 4e-65 AT5G23140 347 / 3e-121 nuclear-encoded CLP protease P7 (.1) Lus10040981 [exp] 207 / 5e-65 AT5G23140 350 / 1e-122 nuclear-encoded CLP protease P7 (.1) Lus10000063 [exp] 181 / 4e-57 AT5G23140 128 / 2e-38 nuclear-encoded CLP protease P7 (.1) Lus10010196 [exp] 173 / 6e-52 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1) Lus10017397 [exp] 172 / 1e-51 AT5G23140 394 / 1e-140 nuclear-encoded CLP protease P7 (.1) Lus10002422 [exp] 87 / 2e-19 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10001450 [exp] 88 / 3e-19 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10007589 [exp] 86 / 7e-19 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092600 [exp] 182 / 9e-56 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.007G071700 [exp] 183 / 2e-55 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.003G083300 [exp] 105 / 6e-26 AT4G17040 441 / 2e-157 happy on norflurazon 5, CLP protease R subunit 4 (.1) Potri.002G195200 [exp] 103 / 4e-25 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.014G119700 [exp] 102 / 8e-25 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.004G092100 [exp] 98 / 5e-23 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.004G152900 [exp] 97 / 5e-23 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.003G103300 [exp] 97 / 8e-23 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.009G114001 [exp] 94 / 7e-22 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.001G115900 [exp] 86 / 4e-19 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00574 [flax] [poplar] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Lus10013435 pacid=23155112 polypeptide=Lus10013435 locus=Lus10013435.g ID=Lus10013435.BGIv1.0 annot-version=v1.0 ATGAACTACACAATTGGCTCCTCGACCGTTACCCCAAGAACCCAGCTACTCACCACCCCCAACTCCCAACTACCTCTCCTCAACTCCTCCGCCCTTCGCT TTCCTCCTCCCAATTTCGTCGACGCCAGATCCCTCAATTCCAGCTCTATCCTCCGTCTCAATTCCGGCAGGTCCGCCTCCCTCAACGCCAAGTTCCGTCC CTCCTACAGCGTCATCCCTATGGTTGTAGAGCAAACCTCCCGCGGTGAGAGATCCTACGACATCTTCTCCAGGCTTCTCAAAGACCGCATCATCTGTATT AATGGTGGCATTGATGATAGCACCGCTCATGTAATCGTTGCACAGCTCCTCTTTCTCGAGTCCGAGAGTTCCACCAAGCCTATCTACATGTACCTCAACT CTCCCGGTGGCTCTGTCACTTCAGGTTCTCTCTCCCTCACTTTCCCTTTTCTCCTTCACTCCGCTAAGAGGGGATTTAGGTTTGAGGGATTGATGCATGC AAGGGGGAATTTAGGTGTTCAAGAAGTGGAGGAGTTCACAAATTCATATAGGGGGTCTAGTCAATCAGCTAGATGGGCTTCAATTGGTGGTTCAAACTCT GCCTGGTGTTGTGGTCTTGCAATTTACGATACGATGCAGTACATCAGGGCCCCAGTGCATACAATTTGCATGGGTTTGGCTGCATCGATGGGTGCTCTTC TCTTAACTGCTGGAGCAAAGGGTGAGAGGAGGGCGCTTCCGAACTCAACAATAATGATTCATCAACCATCTGGAGGGTACGAAGGGCAAGCCCAGGATAT GAGGATCCACACACAGCATATAATTCGCGTTTGGGATAGTCTGAATGAGCTGTACGCAAAGCATACAGGGCAGCCAATAGATATAATCGCCAAGAACATG GACAGGGATAATTACATGAACCCTGATGAGGCTAAGGATTTCGGCCTCATTGACGAAGTGGCCGAACCTAAGGCAATTGATTTGGTTACCGGTACATTTG GTGGCCAAGGAAGGGTAACAGGAGGAGGAGGAGGGTCGGAGCCGAGTCAGGAGGTTTCGACCGAATGA
AA sequence Show only first row Show all	>Lus10013435 pacid=23155112 polypeptide=Lus10013435 locus=Lus10013435.g ID=Lus10013435.BGIv1.0 annot-version=v1.0 MNYTIGSSTVTPRTQLLTTPNSQLPLLNSSALRFPPPNFVDARSLNSSSILRLNSGRSASLNAKFRPSYSVIPMVVEQTSRGERSYDIFSRLLKDRIICI NGGIDDSTAHVIVAQLLFLESESSTKPIYMYLNSPGGSVTSGSLSLTFPFLLHSAKRGFRFEGLMHARGNLGVQEVEEFTNSYRGSSQSARWASIGGSNS AWCCGLAIYDTMQYIRAPVHTICMGLAASMGALLLTAGAKGERRALPNSTIMIHQPSGGYEGQAQDMRIHTQHIIRVWDSLNELYAKHTGQPIDIIAKNM DRDNYMNPDEAKDFGLIDEVAEPKAIDLVTGTFGGQGRVTGGGGGSEPSQEVSTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013435 [exp]	0	1
AT1G03600		PSB27	photosystem II family protein ...		Lus10037438 [exp]	2.2	0.9213
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10026638 [exp]	3.6	0.8967
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	4.9	0.9134
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10016971 [exp]	5.7	0.9143
AT3G19220		CYO1 ,SCO2	SNOWY COTYLEDON 2, SHI-YO-U ME...		Lus10014051 [exp]	5.8	0.8821
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10021297 [exp]	6.5	0.8964
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	6.9	0.9171
AT1G26220			Acyl-CoA N-acyltransferases (N...		Lus10013061 [exp]	8.5	0.8975
AT3G27850		RPL12-C	ribosomal protein L12-C (.1)		Lus10022261 [exp]	10.4	0.9049
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10030421 [exp]	10.6	0.8682

Compare expression of checked genes

Lus10013435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.