Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23160 82 / 6e-18 unknown protein AT5G08240 81 / 8e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040984 [exp] 370 / 2e-129 AT5G08240 89 / 2e-20 unknown protein Lus10010194 [exp] 142 / 2e-39 AT5G23160 90 / 3e-20 unknown protein Lus10017395 [exp] 133 / 1e-37 AT5G23160 83 / 6e-19 unknown protein Lus10033739 [exp] 40 / 0.001 ND 41 / 5e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092400 [exp] 92 / 3e-21 AT5G08240 100 / 9e-25 unknown protein Potri.007G071900 [exp] 87 / 1e-19 AT5G08240 92 / 2e-21 unknown protein Potri.013G149300 [exp] 63 / 3e-11 AT5G23160 56 / 5e-09 unknown protein Potri.001G408900 [exp] 52 / 2e-07 AT5G08240 52 / 1e-07 unknown protein Potri.019G119000 [exp] 51 / 3e-07 AT5G08240 52 / 1e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013437 pacid=23155150 polypeptide=Lus10013437 locus=Lus10013437.g ID=Lus10013437.BGIv1.0 annot-version=v1.0 ATGAAAAACCCTCCATCCGTCACCGCCGCTACCAAAACTTTCCCACTCCACTCTTCCTCTCTGGCGGAGGAAACCAATGGCAGTAATAACAGTACAAAAG AATGTGATCACAAGGAGTTCAACAAGTCAAAGTTCAACAGGTGGATAACAAACTGTATCGTCTCCTCCAGGAAAAGGCAGCCTCCGGATGAGACTACTGG TATCAGTACGGAGTCATCGGAAAAGAAAAACACCGTGCCCGCCGGTGCTTCAGAGGATCGTGGTGACTTGGAGGACATGAAGAGCGTCGTCACATGTAAA AACCGGTTGTCCCTTTGCAAGAAAAAGTATGACGACAAAACCAGGAGCAGCGGGTCATGTAGTAGGACCCACCCGGGTTCCCCGGTATCCATGTCGAATT CAAAGGCCCCAAACGCCAGCGTTTTGGCTCCCCGGTCCGCCACAGTGCCGGAACTTGATGATGAGAAAATTCAACCACTAACGGCCCCGAAGAAGGAAGA GAGGAAGTTGGGGTCGGTGGTGGGGATGTCGATGATTGTGGTGACGTTGGTGATCATGGTGGTCTGGGGTCGATTGTGTGCCATTGTTTGGACGTTAGCA TGGTTGTATTTGGTCCCGCGTTTGAGAACATCCCTGTCCGAGGTGCAAGCCAAGCCGAACCGTGACAAGAATATTAGTAGCAATATTATTGCTTCTGTGA AAAGAAGAGAAGAGTGTGAATTTGGTGGTTCGAGTCCGGATTTGGATTCAGCGGAATATAATAGAAGAGTTGTGTTGGAAGGATTTCTTGAAAGAAATCG TCGCCCACAGCTTTTTAAAATGAATAGATGTGTACATGATTTGTAG
AA sequence Show only first row Show all	>Lus10013437 pacid=23155150 polypeptide=Lus10013437 locus=Lus10013437.g ID=Lus10013437.BGIv1.0 annot-version=v1.0 MKNPPSVTAATKTFPLHSSSLAEETNGSNNSTKECDHKEFNKSKFNRWITNCIVSSRKRQPPDETTGISTESSEKKNTVPAGASEDRGDLEDMKSVVTCK NRLSLCKKKYDDKTRSSGSCSRTHPGSPVSMSNSKAPNASVLAPRSATVPELDDEKIQPLTAPKKEERKLGSVVGMSMIVVTLVIMVVWGRLCAIVWTLA WLYLVPRLRTSLSEVQAKPNRDKNISSNIIASVKRREECEFGGSSPDLDSAEYNRRVVLEGFLERNRRPQLFKMNRCVHDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23160			unknown protein		Lus10013437 [exp]	0	1
AT5G18030			SAUR-like auxin-responsive pro...		Lus10027317 [exp]	1.0	0.9661
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10014300 [exp]	1.4	0.9611
AT3G06070			unknown protein		Lus10034044 [exp]	2.8	0.9527
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10018764 [exp]	4.9	0.9400
AT5G18020			SAUR-like auxin-responsive pro...		Lus10039020 [exp]	5.8	0.9174
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	6.2	0.9545
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	6.5	0.9422
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10024853 [exp]	6.7	0.9212
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10002421 [exp]	6.7	0.9428
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027428 [exp]	7.4	0.9316

Compare expression of checked genes

Lus10013437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.