Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08300 325 / 7e-110 Succinyl-CoA ligase, alpha subunit (.1) AT5G23250 317 / 9e-107 Succinyl-CoA ligase, alpha subunit (.1.2) AT3G06650 54 / 8e-08 ACLB-1 ATP-citrate lyase B-1 (.1) AT5G49460 52 / 5e-07 ACLB-2 ATP citrate lyase subunit B 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040992 [exp] 380 / 1e-131 AT5G08300 591 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10017389 [exp] 377 / 2e-130 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010187 [exp] 368 / 5e-127 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10017337 [exp] 205 / 1e-65 AT5G08300 132 / 8e-38 Succinyl-CoA ligase, alpha subunit (.1) Lus10017331 [exp] 207 / 2e-65 AT5G08300 171 / 5e-52 Succinyl-CoA ligase, alpha subunit (.1) Lus10010185 [exp] 196 / 4e-61 AT5G08300 377 / 1e-132 Succinyl-CoA ligase, alpha subunit (.1) Lus10006405 [exp] 72 / 2e-14 AT5G08300 80 / 2e-17 Succinyl-CoA ligase, alpha subunit (.1) Lus10016910 [exp] 54 / 1e-07 AT5G49460 1111 / 0.0 ATP citrate lyase subunit B 2 (.1) Lus10037770 [exp] 52 / 4e-07 AT5G49460 1118 / 0.0 ATP citrate lyase subunit B 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091400 [exp] 329 / 6e-112 AT5G23250 515 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.015G028200 [exp] 299 / 7e-100 AT5G23250 507 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.012G036200 [exp] 297 / 3e-99 AT5G23250 496 / 6e-178 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.008G105300 [exp] 57 / 7e-09 AT5G49460 1131 / 0.0 ATP citrate lyase subunit B 2 (.1) Potri.010G145766 [exp] 54 / 5e-08 AT5G49460 612 / 0.0 ATP citrate lyase subunit B 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02629 [flax] [poplar] CoA_binding CoA binding domain CL0506 [flax] [poplar] Succ_CoA_synth PF00549 [flax] [poplar] Ligase_CoA CoA-ligase
Representative CDS sequence Show only first row Show all	>Lus10013440 pacid=23155136 polypeptide=Lus10013440 locus=Lus10013440.g ID=Lus10013440.BGIv1.0 annot-version=v1.0 ATGGCTCGCCAAGCAACCAAGCTGGTTGCCTCTTTGTCCTCGAAGCTTCGCTCTCCCAATCCCCAGATCATCCCGCTCTCTTCTTCCTCCTCCCATTCCC TGTCGCAATCGCGCTCCTTCGCCTCTGCTCCGCCTCCCCCGCCGGCGGTGTTCGTGGACAAAAATACCCGCATCATTTGCCAGGGCATCACCGGCAAGAA CGGCACCTTCCATACCGAACAAGCCATTGAATATGGCACCAAGATGGTAGCTCCTTGTTTTGATCTTCCGTTTTCTTCCATTCTACTGATTCATAAGTTA GGTGTCGGGCGTTTGGTTCAGGTTGGAGGGGTCACCCCTAAGAAGGGTGGTACAGAACACTTGGGGCTTCCCGTCTTCAACTCTGTGGCAGAGGCAAAGG CTGAAACAAAAGCTAATGCATCAGTGATTTATGTTCCTCCACCCTTTGCAGCTGCAGCTATTATGGAGGCTATGGAAGCTGAATTGGACCTTGTTGTTTG TATTACAGAAGGAATTCCTCAGCATGACATGGTGTGTGAATTTTATCCCTTACTTTACTTCCATCACCGAAAGCTGTATTTGAAAGCTGATGGAGGTGTT TCATGTCTCCTTTTTGAGTTATCCGTTGCTGCCCATAGTAGTTTTAGCTTCTTTCATCGGGTTTTCCAAACAACAGCAGTTGGCCTTGGGCAATCCACAT GTGTAGGTATTGGCGGGGGGGGGGGGGGAGGTGGGGGGGATGTTTGTTGTGGGTGGGGTGTGAGTGTGGAGAAGTTTCTAGCAGATCCTCAGACCGAAGG TATCGTTCTTATTGGTGAGATTGGAGGTACTGCTGAAGAGGACGCTGCTGCTGTAATAAAGGCGAGCAAGACTGAAAAGCCAATTGTCGCATTTATTGCT GGACTAACGGCTCCACCTGGGCGTCGTATGGGACATGCTGGAGCAATCGTGTCTGGGGGGAAGGGAACTGCACAAGACAAGATCAGGACACTAAAGGATG CTGGAGTGACCGTTGTTGAATCTCCTGCGAAGATTGGCACAGCCATGTTCAGTGTCTTCAAGGAGAGGGGTCTGGTTAATTAA
AA sequence Show only first row Show all	>Lus10013440 pacid=23155136 polypeptide=Lus10013440 locus=Lus10013440.g ID=Lus10013440.BGIv1.0 annot-version=v1.0 MARQATKLVASLSSKLRSPNPQIIPLSSSSSHSLSQSRSFASAPPPPPAVFVDKNTRIICQGITGKNGTFHTEQAIEYGTKMVAPCFDLPFSSILLIHKL GVGRLVQVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVCEFYPLLYFHHRKLYLKADGGV SCLLFELSVAAHSSFSFFHRVFQTTAVGLGQSTCVGIGGGGGGGGGDVCCGWGVSVEKFLADPQTEGIVLIGEIGGTAEEDAAAVIKASKTEKPIVAFIA GLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLKDAGVTVVESPAKIGTAMFSVFKERGLVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10013440 [exp]	0	1
AT4G00585			unknown protein		Lus10012175 [exp]	1.7	0.9415
AT1G70780			unknown protein		Lus10019143 [exp]	2.8	0.9393
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	3.0	0.9534
AT5G57290			60S acidic ribosomal protein f...		Lus10010890 [exp]	5.0	0.9404
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002026 [exp]	7.5	0.9231
					Lus10023559 [exp]	8.8	0.9397
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	9.0	0.9381
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	9.2	0.9497
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10029344 [exp]	9.3	0.9222
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	10.7	0.9398

Compare expression of checked genes

Lus10013440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.