Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19940 685 / 0 Major facilitator superfamily protein (.1) AT1G50310 682 / 0 ATSTP9 sugar transporter 9 (.1) AT3G19930 665 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT5G23270 647 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT1G11260 613 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 609 / 0 STP12 sugar transporter protein 12 (.1) AT5G26340 572 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 561 / 0 STP7 sugar transporter protein 7 (.1) AT1G77210 503 / 2e-175 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT1G34580 489 / 5e-170 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040993 [exp] 743 / 0 AT1G50310 601 / 0.0 sugar transporter 9 (.1) Lus10040991 [exp] 620 / 0 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10018422 [exp] 618 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002597 [exp] 593 / 0 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10010534 [exp] 567 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 565 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10036325 [exp] 546 / 0 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10009656 [exp] 533 / 0 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2) Lus10021924 [exp] 526 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G090700 [exp] 771 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 752 / 0 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 748 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 748 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 738 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.004G033600 [exp] 607 / 0 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 593 / 0 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.001G110400 [exp] 574 / 0 AT1G11260 658 / 0.0 sugar transporter 1 (.1) Potri.004G233500 [exp] 573 / 0 AT5G61520 574 / 0.0 Major facilitator superfamily protein (.1.2) Potri.004G109765 [exp] 566 / 0 AT1G11260 630 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10013441 pacid=23155139 polypeptide=Lus10013441 locus=Lus10013441.g ID=Lus10013441.BGIv1.0 annot-version=v1.0 ATGGCGGCAGGAGGAGGCCATATCTCCGAGTACGAAGTGAAACACTACGAAGGCCGGGTCACCGGCTTCGTACTCATCACCTGCGTGGTGGCCGCATTCG GCGGCCTCATCTTCGGATACGACATCGGTATCTCCGGAGGTGTAACCTCCATGGATTCATTCCTAAGCAAATTCTTCCCGTCCGTTTTCCACAAAGAAAA AGAAGGTCACCGTGATAACATGTACTGCAAATTCGATAGCCATCTCCTCACACTATTCACATCATCCCTTTACCTCGCCGGACTTATCGCCTCCTTCTGC GCCTCCGTAGTTACCAGAACCTTCGGTCGGAAGATCTCCATGTTAGTCGGAGGACTCGTCTTTCTCGCCGGCTCGATCTTCAACGGCCTTGCAACAAACG TCGCTATGCTCATCATCGGTCGTCTTCTGCTCGGAGTCGGCGTCGGATTCGCCAATCAGTCTGTTCCAGTTTATTTATCAGAAATGGCGCCTTCAAGACT CAGGGGAGCTCTGAACATCGGATTTCAAATGGCGATCACGACTGGAATTTTGGCGGCGAGTTTGATTAACTACGGCACGGCTCAGATTAAAGGTGGATGG GGATGGAGGCTATCTTTGGGACTTGCTGCTGTTCCTGCAATTATGATTACGATCGGATCCATTTTCCTCCCCGATACGCCGAATTCGATCCTGGAGAGGG GTGATACTGAGAAGGCGAGGGAGATGTTGAGGAAAGTTCGCGGCACAGATAATGTGGATGAGGAGTTTCAGGATCTGATTGATGCGTGTCATGCTGCTAA GAGAGTTGATAACCCGTGGAAGACGATCATGGAGCCGCGATATAGGCCTCAGGTTGTGATTTGCTTTCTGATTCCGTTCTTCCAGCAGCTTACTGGGATC AACGTGATTATGTTCTACGCTCCGGTGCTGTTCAAGACTCTGGGGTTTGGGGATGATGCTTCGCTCATGTCTGCGGTTATTACTGGTCTTGTTAATGTGT TTGCGACGTTTGTTTCGATATTGGTGGCTGATAAGTTTGGAAGGAGGGTTCTGTTTTTGGAAGGTGGTGTGCAGATGCTCATTTCCCAGGTGCTTGTTGC AGTGATGATTGCCAAGGCATTTGGAACGGCAGGGGTCGGGGTGCTATCAAAAGCAGACTCGCTGCTTGTGTTGATCTTGATATGCTTCTACGTTGCAGGA TTTGCATGGTCATGGGGACCGTTAGGGTGGTTAGTGCCAAGTGAGATATGTCCATTGGAGATAAGATCAGCTGGACAAGCCATTAACGTGTCAGTGAACA TGCTATTCACATTCATCATTGGTCAGTTCTTCTTGGCAATGCTCTGCAGCATGAAATTTGGGCTCTTCCTCTTCTTTGGCGGATGTGTGCTCATCATGAC CACCTTTGTTTACTTCTTCATTCCGGAGACCAAAAACGTTCCTATTGAAGAGATGAACAGGATTTGGAAGGCACATTGGTTCTGGGGAAAGTACATGCCT GATGATGCATTGGAGGGCTACAACAAGAGTAAGATGAAGGAATAA
AA sequence Show only first row Show all	>Lus10013441 pacid=23155139 polypeptide=Lus10013441 locus=Lus10013441.g ID=Lus10013441.BGIv1.0 annot-version=v1.0 MAAGGGHISEYEVKHYEGRVTGFVLITCVVAAFGGLIFGYDIGISGGVTSMDSFLSKFFPSVFHKEKEGHRDNMYCKFDSHLLTLFTSSLYLAGLIASFC ASVVTRTFGRKISMLVGGLVFLAGSIFNGLATNVAMLIIGRLLLGVGVGFANQSVPVYLSEMAPSRLRGALNIGFQMAITTGILAASLINYGTAQIKGGW GWRLSLGLAAVPAIMITIGSIFLPDTPNSILERGDTEKAREMLRKVRGTDNVDEEFQDLIDACHAAKRVDNPWKTIMEPRYRPQVVICFLIPFFQQLTGI NVIMFYAPVLFKTLGFGDDASLMSAVITGLVNVFATFVSILVADKFGRRVLFLEGGVQMLISQVLVAVMIAKAFGTAGVGVLSKADSLLVLILICFYVAG FAWSWGPLGWLVPSEICPLEIRSAGQAINVSVNMLFTFIIGQFFLAMLCSMKFGLFLFFGGCVLIMTTFVYFFIPETKNVPIEEMNRIWKAHWFWGKYMP DDALEGYNKSKMKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10013441 [exp]	0	1
AT3G42880			Leucine-rich repeat protein ki...		Lus10037688 [exp]	10.1	0.9981
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10006943 [exp]	14.3	0.9981
					Lus10039439 [exp]	17.4	0.9980
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10009469 [exp]	20.3	0.9979
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008639 [exp]	22.7	0.9979
AT2G48030			DNAse I-like superfamily prote...		Lus10027979 [exp]	23.0	0.9611
					Lus10036646 [exp]	23.6	0.9949
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10040995 [exp]	23.7	0.9846
					Lus10010593 [exp]	24.7	0.9979
					Lus10019223 [exp]	25.8	0.9885

Compare expression of checked genes

Lus10013441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.