Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04190 67 / 3e-12 PKS4 phytochrome kinase substrate 4 (.1) AT2G02950 44 / 0.0001 PKS1 phytochrome kinase substrate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040995 [exp] 508 / 6e-180 AT5G04190 117 / 2e-28 phytochrome kinase substrate 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G090000 [exp] 197 / 7e-59 AT5G04190 75 / 3e-14 phytochrome kinase substrate 4 (.1) Potri.007G074056 [exp] 179 / 5e-52 AT5G04190 102 / 2e-23 phytochrome kinase substrate 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013442 pacid=23155143 polypeptide=Lus10013442 locus=Lus10013442.g ID=Lus10013442.BGIv1.0 annot-version=v1.0 ATGAGAGCAATTCCAGGGAAGCAAGGATCATTATTTCCTCCTCACTTCCCTTTCCCACACAACAACAAAACAGCCATATTAGATGCTTCTTACGACTCCG AGATCAGCATTTTCGACGCCCAGAAGTACTTCAACGAAGGCGGCACCATACTCAACACCAAGAAAGTATCATCCCCTGTAATTTCTACTAATGGCACATC AGGACTCGAGCGCATTCCCGAACTCCCTCCTAGATTTTCATCCGCGTCCTCCTCTGTTGACGGGTATGGATACGGAAATCGGAACTACAGAACCCGATCG TTCCACGCCACACCGACTGCATCGTCGGAGGCTAGTTGGAACAGCCAGACCGGGTTGCTCTCTAATCCACCGGGTGCCTTGGCTGTATCGGTCAGAAATC ATCATCACCATCATCATAATCAAACCGCTGTCGACGATCATAAGAAAATTGGTTCTACTGCAAAGAAATGGCTTCTGAGGAGGCGATGCCCTTGCTCCGG TAAGAAATCAGTACAGGTTGAGGAGAAGGCGGCACCGGAACTTAAAATACAGCCAGCAGCAGGCGCACATCTCAGTCCAAATTCGAGGCTAATGATCAAT TCGATGATGAAGAGACAGGGTAGCATTACTCCGAAAAGTAATTTTAGTAGCTCAGCTGCTTCAAATGATTGGTCGGAGCGACGGGAAGAAGCGGCGGCGC CGGGGGAGGTTGTTCCCAATGTCGTTCGAAGGATATCCGCAGAGACTAATCGGTTCGTCGGCGGTCCAGGATTAGGTCAACCCCGCCGCGTTGTTTTGAC TCCTAATTTCAGCGAAGGCAACAAGGACAGCAGCAACGGCGGAGGATTTACGTTTCCGATACTGAGTCAGGCGGCTGCAGTGCCGCCGCCTGTGGAATTG GGGGTGAAAATTGGTGCTGAATAA
AA sequence Show only first row Show all	>Lus10013442 pacid=23155143 polypeptide=Lus10013442 locus=Lus10013442.g ID=Lus10013442.BGIv1.0 annot-version=v1.0 MRAIPGKQGSLFPPHFPFPHNNKTAILDASYDSEISIFDAQKYFNEGGTILNTKKVSSPVISTNGTSGLERIPELPPRFSSASSSVDGYGYGNRNYRTRS FHATPTASSEASWNSQTGLLSNPPGALAVSVRNHHHHHHNQTAVDDHKKIGSTAKKWLLRRRCPCSGKKSVQVEEKAAPELKIQPAAGAHLSPNSRLMIN SMMKRQGSITPKSNFSSSAASNDWSERREEAAAPGEVVPNVVRRISAETNRFVGGPGLGQPRRVVLTPNFSEGNKDSSNGGGFTFPILSQAAAVPPPVEL GVKIGAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10013442 [exp]	0	1
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10040995 [exp]	1.0	0.9924
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10021461 [exp]	11.9	0.9723
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10026134 [exp]	13.5	0.9466
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10003792 [exp]	13.7	0.9432
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10040993 [exp]	16.5	0.9848
					Lus10036646 [exp]	20.0	0.9835
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10039588 [exp]	22.4	0.9047
AT4G35160			O-methyltransferase family pro...		Lus10017691 [exp]	24.2	0.9827
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10043247 [exp]	26.6	0.9823
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10023114 [exp]	29.4	0.9822

Compare expression of checked genes

Lus10013442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.