Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19960 1747 / 0 ATM1, ATATM myosin 1 (.1.2) AT1G50360 1708 / 0 ATVIIIA, VIIIA MYOSIN VIII A, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G54280 1227 / 0 ATMYOS1, ATM4, ATATM2, ATM2 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) AT4G27370 1127 / 0 ATVIIIB, TVIIIB, VIIIB MYOSIN VIII B, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G54560 622 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT5G43900 617 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT2G33240 608 / 0 ATXID, XID myosin XI D (.1) AT1G08730 607 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G04160 606 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT4G33200 599 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017377 [exp] 1890 / 0 AT3G19960 1806 / 0.0 myosin 1 (.1.2) Lus10010173 [exp] 1460 / 0 AT3G19960 1389 / 0.0 myosin 1 (.1.2) Lus10040996 [exp] 1244 / 0 AT3G19960 1049 / 0.0 myosin 1 (.1.2) Lus10038576 [exp] 1130 / 0 AT5G54280 1378 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10037876 [exp] 1110 / 0 AT5G54280 1383 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10022850 [exp] 617 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10021570 [exp] 612 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10032597 [exp] 608 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 600 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074800 [exp] 1873 / 0 AT3G19960 1899 / 0.0 myosin 1 (.1.2) Potri.005G089200 [exp] 1868 / 0 AT3G19960 1896 / 0.0 myosin 1 (.1.2) Potri.001G407000 [exp] 1257 / 0 AT5G54280 1513 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.011G126800 [exp] 1213 / 0 AT5G54280 1519 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.006G220000 [exp] 624 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.013G043900 [exp] 619 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 613 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G233100 [exp] 611 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.009G025300 [exp] 607 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.006G145700 [exp] 598 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain)
Representative CDS sequence Show only first row Show all	>Lus10013443 pacid=23155104 polypeptide=Lus10013443 locus=Lus10013443.g ID=Lus10013443.BGIv1.0 annot-version=v1.0 ATGTTAGATGAAGAGAGGCCTTCTGTGTCTTCACCTGCTCCTGTGTCTGTAATGGGTAATGAGCGTAGGTGGTCGGACACAACACCCTACAATATAAAGA AGAAGCTCCGATCCTGGTTTCAACTTGCAAATGGGGACTGGGAGCTGGGGAGTATCGTATCAACGTCAGGGAGTGATTCTGTTATTACAACCTCTGATGG GAAAGTACTAACAGTGAAATCTGAAAGTCTTGTAGCAGCAAATCCTGATATACTTGATGGTGTAGATGACCTGATGCAGCTTAGCTACTTAAGCGAGCCA TCAGTCCTATACAATCTTCAGTACAGATACAATCAAGATATGATATATACGAAAGCAGGACCCGTGTTGATAGCTATCAATCCCTTTAAGAAGGTTCCTT TGTACGGGAATGATTTCATTGATGCATACAGAAATAAATCTACTGATAACCCGCATGTGTATGCCATCACAGACACTGCTATCAAAGAGATGATACGAGA TGAAGTAAATCAATCTATTATCATCAGTGGTGAGAGTGGAGCAGGAAAGACCGAGACTGCTAAGATAGCAATGCAGTATTTGGCTGCTCTTGGTGGTGGT AGTGGTATAGAGCATGAGATACTGAAAACTAATCCAATCTTGGAAGCATTTGGTAATGCAAAGACTTTGAGGAATGACAACTCGAGTCGCTTTGGAAAGC TGATTGAGATCGACTTTAGTGAAACTGGAAAAATATTGGGTGCTAGAATTCAAACTTTTATATTTACTGTGGAGCAGTCTAGAGTGGTCCAATGCATAGA AGGAGAAAGGTCTTATCACATATTCTACCAGCTTTGTGCTGGTGCTCCATCAAGACTTAGAGATAAAATACATTTGAAGAGTGTGGATGACTATAAATAT CTGAGACAGAGTGACTGTTGCTCAATAAACGGGGTTGATGACGCGCAAAACTTTCACATTGTTACGGAAGCTTTAGACACTGTTCATGTTAGCAGGGAGG ATCAAGAGAATGTCTTTGCGATGCTTGCAGCAGTATTGTGGCTAGGAAATGTCTCATTTTCTGTTATCGATAATGAGAATCATGTTGAGCCTTTGGAAGA TGAATGTCTGGTGTCTGTTGCAGAATTAATTGGTTGCAAAGTTGAGGAGCTAAAGCTGGCATTGTCAACTCGGAAAATGAGAGTTGGCAATGATACCATT ATCCAGAAGCTAACTTTATCCCAGGCCATCGATACAAGAGATGCTTTGGCAAAGTCCATTTATGCTTGTCTCTTTGAATGGCTGGTTGAACAGATAAATG AATCGCTTGCAGTTGGGAAAAAGAGAACTGGCAGATCCATCAGCATTTTAGATATATATGGATTTGAATCATTTCAAAGGAATAGCTTTGAGCAGTTCTG CATAAATTATGCCAATGAGAGACTACAGCAACACTTCAATCGCCATCTATTCAAGTTAGAACAAGAGGAATATATCCAAGATGGCATTGATTGGACGAAA GTCGATTTTGAAGATAATCAAAATTGTCTCAATCTTTTTGAAAAGAAACCACTCGGGTTGCTGTCATTGTTAGATGAAGAATCCACTTTCCCTAATGGCA CAGATTTGACTTTCGCCGACAAGCTTAAGCAGCATCTGCAGTCTAACTCATGTTTCAGAGGAGACAGAGGGAAAGCTTTTACAGTCGGTCATTATGCTGG GGAGGTTACATATGATACAATTGGGTTTCTAGAGAAGAATAGGGACTTACTGCATATGGACGCTATTCAGCTTCTTTCTTCATGCTCATGCCATCTTCCC CGGAAGTTTGCATCAAGTATGCTTGTGCAATCCGAAAAGCCTGTTATTGGTTCTTTATATAAAGCTAGCGGAGCAGAATCCCAGAAGCTGAGTGTTGCAA CTAAGTTCAAGGGTCAACTCTTTCACTTAATGAAACGCCTAGAAAGTACCACACCACATTTCATACGCTGCATAAAACCCAACAACAGTCAGTCTCCTAG ATCATATGAGCAGGGAGTTGTATTGCAACAGCTCAGATGTTGTGGGGTCCTAGAGGTTGTCCGAATATCCAGGTCAGGATTTCCTACAAGAGTGACACAT CAGAAGTTTGCCAGAAGGTACGATTTCCTTCTACTGGAAAATGCCACCTCTCGAGACCCACTTGGTGTTTCTGTGGCAATTCTTCACCAGTTTGGTATCT TGCCTGAGATGTATCAAGTTGGTTATACAAAGTTATTTTTCCGCACTGGACAGATTGGAATGCTTGAAGATACAAGAACCCGCACTCTTAATGGCATTTT ACGCGTTCAAAGCTGTTTTCGGGGTCACCAAGCTCGCAGCTACCTTAGACACCTTAGGAGTGGAATAGCCGCTCTTCAATCATTTATTCGAGGGGACAAG ATACGGAAAGAATACTTATTCCTATGGGGAAGACATAGGGCCGCCATTGTTATCCAAAGGCAGGTGAAGAGCATGATTTGCAGGAATAAATATAAGAACG TTCACCAGGCATCACTCTTAATACAATCTGTTATTCGTGGATGGTTGGTTAGAAGATGCTCCGGTGATGTGGGGATATTACTTTCAAGGGTCAAGGGGAA TGAGTCGGAGGAAGTGCTGGTGAAGGCGTTGTTTCTTGCTGATTTACAGCGACGGGTTCTCAAGTCAGAGGCTGGCTTTAGAGAGAAAGAAGAGGAGAAT GACATCCTCAACCAGCGGATTCAGCAGTATGAGAGCCGATGGTCGGAATATGAAGTGAAGATGAAGTCAATGGAGGAAGTGTGGCAGAAACAGATGAGAT CCTTGCAATCAAGCCTGTCGATCGCAAAGAAGAGTCTGGCTATCGATGATTCCGAGAGGAACTCCGATGCTTCAGTTAATGCAAGTGACGAAAGGGAGTC TAGTTGCGATACCGGAAGCAATTACAGAAGTCAGGAAAGTAATGGGCTGAGAACGATGAGTGCAGGTTTGAGCGTGATAAGCCGGTTGGCAGAAGAGTTT GAACAGAGAAGTCAAGTATTTGGGGATGATGCAAAGTTCTTGGTTGAGGTTAAATCTGGCCAGGTGGATGCGACCTTGAATCCAGACCGGGAACTTACAA GGTTGAAGCAAATGTTTGAGAGTTGGAAGAAGGATTACAGTGGAAGGTTAAGAGAAACGAAGTTGATACTGAATAAGCTTGGTAGTGATGAAGGCGCCCT TGACAAAGTAAAGAAGAAATGGTGGGGGAGGAGGAACAGCATTAGGTAG
AA sequence Show only first row Show all	>Lus10013443 pacid=23155104 polypeptide=Lus10013443 locus=Lus10013443.g ID=Lus10013443.BGIv1.0 annot-version=v1.0 MLDEERPSVSSPAPVSVMGNERRWSDTTPYNIKKKLRSWFQLANGDWELGSIVSTSGSDSVITTSDGKVLTVKSESLVAANPDILDGVDDLMQLSYLSEP SVLYNLQYRYNQDMIYTKAGPVLIAINPFKKVPLYGNDFIDAYRNKSTDNPHVYAITDTAIKEMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG SGIEHEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIDFSETGKILGARIQTFIFTVEQSRVVQCIEGERSYHIFYQLCAGAPSRLRDKIHLKSVDDYKY LRQSDCCSINGVDDAQNFHIVTEALDTVHVSREDQENVFAMLAAVLWLGNVSFSVIDNENHVEPLEDECLVSVAELIGCKVEELKLALSTRKMRVGNDTI IQKLTLSQAIDTRDALAKSIYACLFEWLVEQINESLAVGKKRTGRSISILDIYGFESFQRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTK VDFEDNQNCLNLFEKKPLGLLSLLDEESTFPNGTDLTFADKLKQHLQSNSCFRGDRGKAFTVGHYAGEVTYDTIGFLEKNRDLLHMDAIQLLSSCSCHLP RKFASSMLVQSEKPVIGSLYKASGAESQKLSVATKFKGQLFHLMKRLESTTPHFIRCIKPNNSQSPRSYEQGVVLQQLRCCGVLEVVRISRSGFPTRVTH QKFARRYDFLLLENATSRDPLGVSVAILHQFGILPEMYQVGYTKLFFRTGQIGMLEDTRTRTLNGILRVQSCFRGHQARSYLRHLRSGIAALQSFIRGDK IRKEYLFLWGRHRAAIVIQRQVKSMICRNKYKNVHQASLLIQSVIRGWLVRRCSGDVGILLSRVKGNESEEVLVKALFLADLQRRVLKSEAGFREKEEEN DILNQRIQQYESRWSEYEVKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDERESSCDTGSNYRSQESNGLRTMSAGLSVISRLAEEF EQRSQVFGDDAKFLVEVKSGQVDATLNPDRELTRLKQMFESWKKDYSGRLRETKLILNKLGSDEGALDKVKKKWWGRRNSIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	0	1
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	4.5	0.9209
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10026359 [exp]	4.9	0.8989
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	5.3	0.9299
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10015900 [exp]	5.5	0.9022
AT2G23770			protein kinase family protein ...		Lus10016299 [exp]	7.3	0.8534
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10040996 [exp]	8.4	0.8985
AT1G54385			ARM repeat superfamily protein...		Lus10002627 [exp]	11.1	0.8608
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	12.0	0.9054
AT1G12390			Cornichon family protein (.1)		Lus10030270 [exp]	12.2	0.8254
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	14.4	0.8824

Compare expression of checked genes

Lus10013443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.