Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23340 591 / 0 RNI-like superfamily protein (.1) AT4G15475 152 / 1e-40 F-box/RNI-like superfamily protein (.1) AT5G01720 120 / 2e-29 RNI-like superfamily protein (.1) AT5G27920 116 / 4e-28 F-box family protein (.1) AT1G21410 108 / 2e-26 SKP2A F-box/RNI-like superfamily protein (.1) AT5G25350 109 / 1e-25 EBF2 EIN3-binding F box protein 2 (.1) AT2G25490 107 / 6e-25 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT3G58530 104 / 7e-25 RNI-like superfamily protein (.1) AT3G07550 104 / 1e-24 RNI-like superfamily protein (.1.2) AT1G77000 96 / 8e-22 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040998 [exp] 806 / 0 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 151 / 1e-39 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10041087 [exp] 134 / 2e-35 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) Lus10036412 [exp] 132 / 8e-35 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2) Lus10001264 [exp] 124 / 1e-30 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 121 / 2e-29 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10034013 [exp] 114 / 6e-27 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10002165 [exp] 111 / 3e-26 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 110 / 5e-26 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088800 [exp] 617 / 0 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.007G075600 [exp] 298 / 8e-100 AT5G23340 291 / 5e-97 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 122 / 4e-30 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 122 / 7e-30 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.017G056400 [exp] 116 / 6e-29 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.016G128400 [exp] 115 / 1e-27 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 114 / 3e-27 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.018G027700 [exp] 112 / 8e-27 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G254100 [exp] 111 / 2e-26 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G238300 [exp] 109 / 2e-26 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013444 pacid=23155155 polypeptide=Lus10013444 locus=Lus10013444.g ID=Lus10013444.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCAATTAGCATAAACTCGGCATTGACGGACGACGAGCTGCGGACGATTCTGGGTAAGCTAGAGGAGGACAAGGATAAGGAGATATTTGGGT TGGTGTGCAAGAGATGGCTGAGATTGCAGAGTACTGAAAGGAGAAAACTAGCTGCTCGAGCTGGACCCCACATGCTCCAGAAAATGGCCGCCAGATTCTC TAGGCTCCTTGAATTGGACCTCTCTCAGTCCGTCTCCAGGTCCTTTTACCCCGGCGTCACCGATTCCGATCTCGCTGTAATCGCTGATGGCTTGAAGTCC CTCCGACTCCTCAATTTGCACAACTGCAAAGGTGTTACTGATCGTGGAATGATGTCAATCGGGAATGGGCTTCCTTGCCTGCAAACCTTGGATGCTTCCT ATTGTAGAAAGCTAACGGACAAAGGACTATCAGCAGTGGCCGAGGGCTGTCCTGATTTGCGGACGCTTCACCTAGCTGGTTGCAGGTTTCTCACTGACGA AATACTTAAAGCTCTCGCCACAAACTGCACCAACCTAGAGGAATTGGGCCTGCAAGGTTGCTCCAACGTAACAGATTCCGGACTTGATCATCTCGTCGGT GGCTGTCGCCATATCAAGTTCTTAGACATCAACAAATGCAGCAATGTAGGGGACTTGGGGGTTTCCAGTGTTTCCAAGGCGTGTTCTGTTTCCTTGCAGA CGCTAAAGCTGCTGGATTGCTATAAAGTAGGGGATGAGTCTATTTTCACTTTGGCAAGACACTGTGAAAATCTCGAGACCCTCATCATCGGAGGCTGTAG AGATATATCTGATGCATCTATGAAGTCGTTGGCCACTGCTTGCAGCCGGAGTCTGAAGAATTTGCGGATGGACTGGTGTTTGAATGTGTCTGATTCGTCA CTAAGTCGCATCCTTGGCGAGTGCAGAAAGCTGGAGGCTTTGGATATTGGATGCTGTGAAGAGATAACAGATGCTGCTTTTGGGGGATTGACCATGGGTG AGACTGATCTGGAGCTCAAAGTTTTGAAGGTCAGTAACTGTCCAAAGATAACCATTACTGGGATAAGAATGCTTTTGGATAAATGCATCAACTTGGAGTA CTTGGATGTAAGGTCCTGCCCTCATGTGACAAAGTTCGAATGCGATGAGGCTGGCTTGCATTTTCCATCATCTTGTAAAGTGAACTTCACTGGTAGTCTG AATGAGCCAGATGTTCTAGTCTGA
AA sequence Show only first row Show all	>Lus10013444 pacid=23155155 polypeptide=Lus10013444 locus=Lus10013444.g ID=Lus10013444.BGIv1.0 annot-version=v1.0 MASSISINSALTDDELRTILGKLEEDKDKEIFGLVCKRWLRLQSTERRKLAARAGPHMLQKMAARFSRLLELDLSQSVSRSFYPGVTDSDLAVIADGLKS LRLLNLHNCKGVTDRGMMSIGNGLPCLQTLDASYCRKLTDKGLSAVAEGCPDLRTLHLAGCRFLTDEILKALATNCTNLEELGLQGCSNVTDSGLDHLVG GCRHIKFLDINKCSNVGDLGVSSVSKACSVSLQTLKLLDCYKVGDESIFTLARHCENLETLIIGGCRDISDASMKSLATACSRSLKNLRMDWCLNVSDSS LSRILGECRKLEALDIGCCEEITDAAFGGLTMGETDLELKVLKVSNCPKITITGIRMLLDKCINLEYLDVRSCPHVTKFECDEAGLHFPSSCKVNFTGSL NEPDVLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23340			RNI-like superfamily protein (...		Lus10013444 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10014185 [exp]	1.0	0.8586
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011882 [exp]	4.1	0.8040
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	10.8	0.8110
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10037783 [exp]	11.4	0.8365
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10042318 [exp]	12.1	0.8556
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	16.2	0.8414
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	18.0	0.7896
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	19.4	0.8387
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030617 [exp]	21.4	0.8229
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10042162 [exp]	22.4	0.8239

Compare expression of checked genes

Lus10013444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.