Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08350 245 / 2e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23370 235 / 2e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 228 / 6e-75 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 224 / 2e-74 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT4G01600 156 / 2e-47 GRAM domain family protein (.1.2) AT5G13200 154 / 3e-46 GRAM domain family protein (.1) AT1G28200 139 / 2e-40 FIP1 FH interacting protein 1 (.1) AT2G22475 130 / 2e-36 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT4G40100 88 / 5e-21 GRAM domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040999 [exp] 448 / 3e-162 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010167 [exp] 365 / 2e-129 AT5G08350 247 / 4e-83 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10017373 [exp] 351 / 7e-124 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10017372 [exp] 259 / 1e-87 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010166 [exp] 252 / 7e-85 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10035154 [exp] 160 / 3e-48 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10031986 [exp] 159 / 8e-48 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10040539 [exp] 141 / 8e-41 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1) Lus10010279 [exp] 140 / 8e-41 AT2G22475 196 / 3e-62 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075700 [exp] 342 / 2e-120 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.007G075200 [exp] 341 / 4e-120 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088700 [exp] 338 / 9e-119 AT5G08350 234 / 5e-78 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088300 [exp] 300 / 4e-104 AT5G23370 244 / 4e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088400 [exp] 300 / 6e-104 AT5G23370 241 / 8e-81 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088200 [exp] 288 / 3e-99 AT5G08350 230 / 1e-76 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.004G068000 [exp] 228 / 2e-75 AT5G08350 196 / 3e-63 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.014G109700 [exp] 153 / 2e-46 AT1G28200 221 / 1e-72 FH interacting protein 1 (.1) Potri.003G165400 [exp] 155 / 3e-46 AT5G13200 350 / 6e-122 GRAM domain family protein (.1) Potri.003G165500 [exp] 154 / 6e-46 AT5G13200 328 / 3e-113 GRAM domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10013445 pacid=23155086 polypeptide=Lus10013445 locus=Lus10013445.g ID=Lus10013445.BGIv1.0 annot-version=v1.0 ATGAAGGGTTCATATCTCCAGGGCCAAGTCATTGGCCATCCAATCACCTCATCTGCTTCAAGGATGCCTCCTACTCCTAGATCCCTACTCCTTGAAGATG AACCAAACCGCTACATCCCTACTCCTGCCCACCAATCTCTAGTGCTCAAAAAACAAAACAAAGTGGATTCAATGCTAAAAAGGATGAACAAGCTTGGGAA GAAAGCAGACAAATTCGCACATGGAATCCGAGAGCATGTGAAACTTGGAAACAAAATCAGTGAGACCTTGAAAGGGAAGTTGAGCCTGGGGGCCAGGATT CTGCAAGTGGGAGGAGTGAAGAAAGTGTTTAGGCAATTGTTCAGTGTTAGCGAAGGGGAGAGACTTATGAAGGCCTCCCAGTGTTATTTATCAACCACTT CTGGCCCCATTGCTGGCCTTCTATTCATATCCACTCACAAGCTTGCCTTCTGTAGTGAGAGATCAATTCAGCTGTCATCTCCTCAGGGAAAATCCATCAG AGTTCACTATAAGGTTGTGGTCCCACTAGAAAAGATAGAAATGGCCAACCAGAGTGAGAATATGGAGAAGCCATCACAGAAATATATGGAGATAGTGACC GTTGACGGGTTTGATTTCTGGTTCATGGGGTTCCTTAGTTACAAGAAAGCTTTCAAGTACCTGGACCTGGCAATATCCACCAGCAGGATTTCAGCATAA
AA sequence Show only first row Show all	>Lus10013445 pacid=23155086 polypeptide=Lus10013445 locus=Lus10013445.g ID=Lus10013445.BGIv1.0 annot-version=v1.0 MKGSYLQGQVIGHPITSSASRMPPTPRSLLLEDEPNRYIPTPAHQSLVLKKQNKVDSMLKRMNKLGKKADKFAHGIREHVKLGNKISETLKGKLSLGARI LQVGGVKKVFRQLFSVSEGERLMKASQCYLSTTSGPIAGLLFISTHKLAFCSERSIQLSSPQGKSIRVHYKVVVPLEKIEMANQSENMEKPSQKYMEIVT VDGFDFWFMGFLSYKKAFKYLDLAISTSRISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	0	1
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	1.0	0.9628
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	1.4	0.9492
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10013446 [exp]	2.4	0.8618
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	2.8	0.8937
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	3.2	0.8789
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	3.6	0.8269
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	4.6	0.8615
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	5.2	0.9067
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Lus10037191 [exp]	5.7	0.8075
AT1G30820			CTP synthase family protein (....		Lus10001218 [exp]	7.1	0.8515

Compare expression of checked genes

Lus10013445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.