Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15000 127 / 4e-36 SCPL50 serine carboxypeptidase-like 50 (.1) AT3G45010 56 / 4e-10 SCPL48 serine carboxypeptidase-like 48 (.1) AT2G27920 54 / 2e-09 SCPL51 serine carboxypeptidase-like 51 (.1.2.3) AT5G22980 48 / 2e-07 SCPL47 serine carboxypeptidase-like 47 (.1) AT3G10410 48 / 2e-07 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT3G52000 47 / 3e-07 SCPL36 serine carboxypeptidase-like 36 (.1) AT3G52010 46 / 1e-06 SCPL37 serine carboxypeptidase-like 37 (.1) AT4G12910 40 / 0.0001 SCPL20 serine carboxypeptidase-like 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041000 [exp] 216 / 4e-70 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1) Lus10042334 [exp] 113 / 9e-31 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10026331 [exp] 108 / 5e-29 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10037380 [exp] 53 / 1e-09 AT3G45010 216 / 1e-68 serine carboxypeptidase-like 48 (.1) Lus10041339 [exp] 54 / 2e-09 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10017466 [exp] 53 / 5e-09 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10037958 [exp] 51 / 2e-08 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10036578 [exp] 51 / 3e-08 AT2G27920 565 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10041352 [exp] 50 / 3e-08 AT2G27920 567 / 0.0 serine carboxypeptidase-like 51 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G060100 [exp] 126 / 1e-35 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129800 [exp] 126 / 2e-35 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129850 [exp] 124 / 5e-35 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.009G003100 [exp] 54 / 2e-09 AT2G27920 589 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Potri.006G119300 [exp] 53 / 3e-09 AT2G27920 515 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Potri.008G034800 [exp] 47 / 7e-07 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 46 / 1e-06 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.013G124900 [exp] 44 / 4e-06 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.004G215400 [exp] 44 / 6e-06 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.001G261201 [exp] 43 / 1e-05 AT3G63470 236 / 2e-75 serine carboxypeptidase-like 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10013446 pacid=23155085 polypeptide=Lus10013446 locus=Lus10013446.g ID=Lus10013446.BGIv1.0 annot-version=v1.0 ATGGCGGGGAAGGAGAGATGTAAGGTGTTGTTGTACCAAGGACAGCACGATCTTAGAGACGGGGTAGTGTCGGTGGAGGCTTGGGTGAAGACGATGAGAA GGTGGGGTGGATTGGCCGAGTTTATGGATGCGAGGAGGGAGGTATGGGAATCGGATGATGGATTGGTGGCTGGGTATGTGCAGCGATGGGGGAGTCTGAC TCAGGCGGTGGTTCTTGGTGCCGGACACCTTGTCCCGACTGACCAGCCGATTAATGCTCAAGCCATGATTGAAGGATGGATTTTAGAGACGGGATCTTTT GGTGCTTCTGCAGCTAAGCCTAACCATTACAGGTGGCAAATCTGA
AA sequence Show only first row Show all	>Lus10013446 pacid=23155085 polypeptide=Lus10013446 locus=Lus10013446.g ID=Lus10013446.BGIv1.0 annot-version=v1.0 MAGKERCKVLLYQGQHDLRDGVVSVEAWVKTMRRWGGLAEFMDARREVWESDDGLVAGYVQRWGSLTQAVVLGAGHLVPTDQPINAQAMIEGWILETGSF GASAAKPNHYRWQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10013446 [exp]	0	1
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	2.4	0.8618
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	3.9	0.8352
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	4.0	0.8145
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10007726 [exp]	4.7	0.7290
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	4.9	0.7853
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	4.9	0.8455
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	11.2	0.7675
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	13.4	0.7868
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	15.3	0.7141
AT5G66440			unknown protein		Lus10040435 [exp]	15.5	0.7068

Compare expression of checked genes

Lus10013446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.