Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08410 129 / 1e-38 FTRA2 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1) AT5G23440 119 / 9e-35 FTRA1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041002 [exp] 275 / 2e-96 AT5G08410 130 / 8e-39 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002200 [exp] 112 / 5e-32 AT5G08410 103 / 3e-28 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1) Potri.010G255500 [exp] 103 / 1e-28 AT5G08410 78 / 4e-18 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0610 [flax] [poplar] ETAP PF02941 [flax] [poplar] FeThRed_A Ferredoxin thioredoxin reductase variable alpha chain
Representative CDS sequence Show only first row Show all	>Lus10013448 pacid=23155130 polypeptide=Lus10013448 locus=Lus10013448.g ID=Lus10013448.BGIv1.0 annot-version=v1.0 ATGAGTTTTTGTGCGTCCTCCTCCTCCACTGCCGCCACCGCCGTTCTAGGCCTTCTGCCTTCTCCCCGGCCTACTACTCGAATCCTCCCGCCACTCTCCT CCACTCCTCCTTCTGTTCGGAAGCATAATCGGAAGCTGGTGGTCTCATGCGAAGTGGCCGTCCGGTCGTCGAACGAATCCTCCGCCAAATCGGATCCCCA ACAGCAAGAAGAGCAGCATAAGATTGGAGCGAGGGTGAGAGTGAAGGTGCCGCTGAAGGTCTACCATGTCCCTAAAGTGCCGGAGGTGGATCTGACTGGC AAAGAAGGCAAGATCAAGCAGTTCGTCGGGGTTTGGAAGGGCAAGCAAATCTCCGCCAATCTCCCTTACAAGGTAGAATTCTTGTTGGACATCGAAGGTC GAGACGCACCTGTCAAGCTATTCGCCCATCTCCGGGACGATGAGTTCGAGTACCTTGATTGA
AA sequence Show only first row Show all	>Lus10013448 pacid=23155130 polypeptide=Lus10013448 locus=Lus10013448.g ID=Lus10013448.BGIv1.0 annot-version=v1.0 MSFCASSSSTAATAVLGLLPSPRPTTRILPPLSSTPPSVRKHNRKLVVSCEVAVRSSNESSAKSDPQQQEEQHKIGARVRVKVPLKVYHVPKVPEVDLTG KEGKIKQFVGVWKGKQISANLPYKVEFLLDIEGRDAPVKLFAHLRDDEFEYLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10013448 [exp]	0	1
AT1G73885			unknown protein		Lus10034345 [exp]	1.7	0.9714
AT5G11840			Protein of unknown function (D...		Lus10039247 [exp]	2.4	0.9687
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10002078 [exp]	2.4	0.9700
AT1G73885			unknown protein		Lus10005112 [exp]	2.8	0.9686
AT3G12345			unknown protein		Lus10040344 [exp]	3.2	0.9616
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10017597 [exp]	3.5	0.9601
AT5G42070			unknown protein		Lus10023063 [exp]	3.7	0.9599
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10033558 [exp]	4.9	0.9599
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10018163 [exp]	6.3	0.9570
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10013403 [exp]	6.7	0.9532

Compare expression of checked genes

Lus10013448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.