Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08570 543 / 0 Pyruvate kinase family protein (.1) AT5G63680 541 / 0 Pyruvate kinase family protein (.1) AT5G56350 473 / 4e-167 Pyruvate kinase family protein (.1) AT4G26390 466 / 2e-164 Pyruvate kinase family protein (.1) AT3G04050 404 / 5e-140 Pyruvate kinase family protein (.1) AT3G55810 371 / 4e-127 Pyruvate kinase family protein (.1) AT3G55650 370 / 2e-126 Pyruvate kinase family protein (.1) AT3G25960 369 / 4e-126 Pyruvate kinase family protein (.1) AT2G36580 259 / 3e-83 Pyruvate kinase family protein (.1) AT3G52990 252 / 9e-81 Pyruvate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041003 [exp] 589 / 0 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10017364 [exp] 549 / 0 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10010159 [exp] 540 / 0 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 498 / 9e-177 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 494 / 3e-175 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10003439 [exp] 427 / 1e-148 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10026875 [exp] 409 / 8e-142 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10035581 [exp] 249 / 3e-79 AT3G52990 941 / 0.0 Pyruvate kinase family protein (.1.2) Lus10008644 [exp] 249 / 4e-79 AT3G52990 967 / 0.0 Pyruvate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002500 [exp] 558 / 0 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 550 / 0 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.003G223100 [exp] 486 / 5e-172 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 484 / 2e-171 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 449 / 1e-157 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 443 / 2e-155 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.006G117400 [exp] 254 / 5e-81 AT3G52990 988 / 0.0 Pyruvate kinase family protein (.1.2) Potri.008G027100 [exp] 244 / 4e-77 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.010G233200 [exp] 240 / 8e-76 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.003G088700 [exp] 150 / 2e-41 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10013449 pacid=23155081 polypeptide=Lus10013449 locus=Lus10013449.g ID=Lus10013449.BGIv1.0 annot-version=v1.0 ATGATTGCTCTCTCATTTGTGCGCAAGGGCTCTGACCTTGTCAATGTCCGCAAGGTCCTTGGACCCCATGCCAAGAATATCAAGTTAATGTCTAAGGTTG AGAATCAGGAGGGTGTTGTCAACTTCGACGAGATATTGCGAGAGACGGATGCATTCATGGTTGCTCGTGGCGATCTGGGAATGGAGATTCCGGTTGAGAA GATATTCCTTGCTCAGAAGATGATGATATACAAGTGCAACCTAGTGGGGAAGCCGGTGGTGACTGCTACTCAGATGCTCGAGTCCATGATCAAGTCTCCG CGTCCAACTCGTGCAGAAGCCACGGATGTTGCCAATGCTGTCCTCGACGGCACTGATTGCGTGATGCTGAGTGGGGAGAGTGCAGCCGGCGCATACCCTG AACTCGCGGTGAAGACCATGCGCAGGATCTGCATAGAAGCCGAGTCGTCGCTGGACTATGGGACCATCTTTAAGGAGATGATAAGGGCAACTCCACTTCC GATGAGCCCCTTGGAGAGCCTTGCGTCTTCTGCTGTCCGGACAGCGAACAAAGCTAGAGCGAAGCTGATAGTGGTGCTGACACGTGGCGGAACGACAGCC ACGTTGGTGGCTAAGTACAGGCCCGCGGTACCAATTCTTTCTGTGGTTGTGCCGGTGTTGACCACCGATTCGTTCGATTGGTCGTGTAGTGATGAGGCGC CAGCAAGGCACAGCCTGATATACAGGGGACTGATCCCTGTGCTGGCGGAAGGGTCTGCAAAGGCTACTGATACAGAATCGACTGAGGAGATATTAGCCGC GGCTCTGAGATCAGCAACGAAGAAGGGTCTGTGCAAGGTAGGAGACGCTGTTGTGGCGCTCCACAGGATAGGGACATGA
AA sequence Show only first row Show all	>Lus10013449 pacid=23155081 polypeptide=Lus10013449 locus=Lus10013449.g ID=Lus10013449.BGIv1.0 annot-version=v1.0 MIALSFVRKGSDLVNVRKVLGPHAKNIKLMSKVENQEGVVNFDEILRETDAFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSP RPTRAEATDVANAVLDGTDCVMLSGESAAGAYPELAVKTMRRICIEAESSLDYGTIFKEMIRATPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTA TLVAKYRPAVPILSVVVPVLTTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDTESTEEILAAALRSATKKGLCKVGDAVVALHRIGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08570			Pyruvate kinase family protein...		Lus10013449 [exp]	0	1
AT5G08570			Pyruvate kinase family protein...		Lus10013450 [exp]	1.0	0.9711
AT3G08650			ZIP metal ion transporter fami...		Lus10003243 [exp]	3.0	0.9492
AT4G24110			unknown protein		Lus10001676 [exp]	3.2	0.9659
AT4G10265			Wound-responsive family protei...		Lus10018532 [exp]	3.9	0.9591
AT4G10265			Wound-responsive family protei...		Lus10018531 [exp]	4.9	0.9574
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10003384 [exp]	7.5	0.9500
AT4G10265			Wound-responsive family protei...		Lus10018533 [exp]	9.5	0.9533
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	9.8	0.9369
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10017165 [exp]	9.8	0.9281
AT4G17260			Lactate/malate dehydrogenase f...		Lus10004350 [exp]	9.9	0.9430

Compare expression of checked genes

Lus10013449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.