Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08570 356 / 2e-122 Pyruvate kinase family protein (.1) AT5G63680 352 / 7e-121 Pyruvate kinase family protein (.1) AT5G56350 328 / 1e-111 Pyruvate kinase family protein (.1) AT4G26390 319 / 5e-108 Pyruvate kinase family protein (.1) AT3G25960 318 / 7e-108 Pyruvate kinase family protein (.1) AT3G55650 318 / 1e-107 Pyruvate kinase family protein (.1) AT3G04050 315 / 1e-106 Pyruvate kinase family protein (.1) AT3G55810 267 / 8e-88 Pyruvate kinase family protein (.1) AT3G52990 135 / 4e-37 Pyruvate kinase family protein (.1.2) AT2G36580 130 / 2e-35 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041003 [exp] 420 / 2e-147 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10017364 [exp] 380 / 5e-132 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10010159 [exp] 379 / 2e-131 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 330 / 3e-112 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 326 / 1e-110 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10003439 [exp] 303 / 2e-101 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10026875 [exp] 301 / 6e-101 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10000672 [exp] 134 / 2e-36 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10011057 [exp] 133 / 3e-36 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254900 [exp] 375 / 7e-130 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 368 / 8e-127 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 328 / 1e-111 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.003G223100 [exp] 322 / 5e-109 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 315 / 3e-106 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 312 / 2e-105 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.008G027100 [exp] 134 / 1e-36 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.003G088700 [exp] 129 / 5e-35 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.010G233200 [exp] 128 / 1e-34 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.012G034000 [exp] 127 / 6e-34 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain
Representative CDS sequence Show only first row Show all	>Lus10013450 pacid=23155073 polypeptide=Lus10013450 locus=Lus10013450.g ID=Lus10013450.BGIv1.0 annot-version=v1.0 ATGGCTAACATTGATATCGAGGGCCTCCTCCGGGGCGACGACGAAGTCGACGAAGGTCGCGTCCCTAAGACCAAAATCGTATGCACTCTCGGTCCTGCCT CTAGATCTGTCCCCATGATCGAGAAGCTTCTCAGGGCTGGCATGAACGTCGCCCGCTTCAATTTCTCCCACGGCTCCCACGACTACCACCAGGAGACCTT GGACAACCTCCGCATCGCCATGCACAATTCCAGCATCCTCTGCGCCGTCATGCTCGACACCAAGGGACCAGAGATTCGAACCGGATTCCTCAAGGATGAG AAGCCAATCCAACTCAAAGAGGGCCAAGAAATCACCATCTCTACTGACTACACCATCAAGGGAGATACGGAGACGATCTCCATGAGCTATAAGAAGCTTC CTCTGGATGTGAAACCTGGCAACACTATCTTGTGTTCCGACGGCACCATCTCCCTCACCGTGCTATCCTGTGATCCAAAGGCTGGAACCGTAAGATGCCG CTGTGAAAATGCTGCCGTGCTTGGCGAGAGGAAAAATGTCAATCTACCGGGTGTTGTGGTGGATCTCCCAACTCTCACTGACAAGGACAGGGAAGACATC CTTCAATGGGGGTGTTCCTAA
AA sequence Show only first row Show all	>Lus10013450 pacid=23155073 polypeptide=Lus10013450 locus=Lus10013450.g ID=Lus10013450.BGIv1.0 annot-version=v1.0 MANIDIEGLLRGDDEVDEGRVPKTKIVCTLGPASRSVPMIEKLLRAGMNVARFNFSHGSHDYHQETLDNLRIAMHNSSILCAVMLDTKGPEIRTGFLKDE KPIQLKEGQEITISTDYTIKGDTETISMSYKKLPLDVKPGNTILCSDGTISLTVLSCDPKAGTVRCRCENAAVLGERKNVNLPGVVVDLPTLTDKDREDI LQWGCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08570			Pyruvate kinase family protein...		Lus10013450 [exp]	0	1
AT5G08570			Pyruvate kinase family protein...		Lus10013449 [exp]	1.0	0.9711
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	1.4	0.9566
AT4G17260			Lactate/malate dehydrogenase f...		Lus10004350 [exp]	4.5	0.9483
AT4G10265			Wound-responsive family protei...		Lus10018532 [exp]	4.6	0.9528
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10008643 [exp]	5.7	0.9504
AT5G39890			Protein of unknown function (D...		Lus10013620 [exp]	6.9	0.9466
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030455 [exp]	9.6	0.9138
AT4G10265			Wound-responsive family protei...		Lus10018531 [exp]	10.6	0.9445
AT4G10265			Wound-responsive family protei...		Lus10018533 [exp]	11.5	0.9460
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10021087 [exp]	13.9	0.8772

Compare expression of checked genes

Lus10013450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.