Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08415 529 / 0 Radical SAM superfamily protein (.1) AT2G20860 337 / 2e-113 LIP1 lipoic acid synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041005 [exp] 657 / 0 AT5G08415 553 / 0.0 Radical SAM superfamily protein (.1) Lus10031630 [exp] 337 / 2e-113 AT2G20860 581 / 0.0 lipoic acid synthase 1 (.1) Lus10033710 [exp] 209 / 4e-60 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10001348 [exp] 65 / 4e-12 ND 78 / 3e-17
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G136000 [exp] 536 / 0 AT5G08415 566 / 0.0 Radical SAM superfamily protein (.1) Potri.019G102700 [exp] 523 / 0 AT5G08415 545 / 0.0 Radical SAM superfamily protein (.1) Potri.007G078400 [exp] 341 / 6e-115 AT2G20860 583 / 0.0 lipoic acid synthase 1 (.1) Potri.005G086200 [exp] 338 / 8e-114 AT2G20860 582 / 0.0 lipoic acid synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily
Representative CDS sequence Show only first row Show all	>Lus10013451 pacid=23155161 polypeptide=Lus10013451 locus=Lus10013451.g ID=Lus10013451.BGIv1.0 annot-version=v1.0 ATGGCGACGATGATGATTCAGAAGCAATTCCTGTCCTCCAATTGTTCCATGGTTCACCATCCCACCCCTACCAACGCCGTCTCTTCCAGCCACTCCTTCC TTTCGATTCGGCTTTCTCGTTCCTGGCGAATTAGGGTTGATCTTGCTTCAGGCAGCACCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCAGCTGC TCTCGGTCCGTTCACTGGTAGGGATCCGAATGTTAAGAAACCCGAGTGGCTTAGGCAGAAGGCTCCTCAGGGCCATCGTTTTGACGATGTTAAGAAAACG CTCTCCAAGTCCAACCTCAGCACTGTATGCGAGGAGGCACAATGCCCAAACATTGGCGAGTGCTGGAACGGTGGCAGCGACGGGATCTCCACCGCCACCA TCATGCTTCTCGGAGACACTTGTACTCGTGGCTGTAGATTTTGTGCAGTCAAAACCAGCAGGAACCCTGCCCCTCCAGACCCCGCCGAGCCCTACAACAC CGCTCTGGCTATCGCTTCTTGGGGTGTGGATTACATCGTCCTGACAAGCGTCGATCGCGATGATTTGCCTGATGGAGGGAGTGGACACTTTGCTCGCACC GTTATGGCCCTTAAGGAAGTGAAGCCTGAGATCATGGTTGAGTGTCTGACCTCTGATTTTCGTGGCGACTTGGAGGCGGTGGACACACTGGTACATTCAG GATTGGATGTCTTTGCCCACAACGTTGAGACTGTGAAACGCCTTCAGCGAATTGTTAGAGATCCTCGTGCAGGGTATGAGCAAAGCTTGAGTGTGTTGAA GCATGCTAAGCTGAACAAGGATGGTATGATAACGAAAACATCTATAATGTTGGGTCTTGGAGAAACCGACGAGGAGTTGAAGGAGACCATGGCTGATTTA AGGGCTATTGGTGTCGATATTCTGACGCTTGGGCAGTACTTACAGCCAACTCCACTGCACCTAACTGTGAAGGAGTATGTGACACCTGAGAAGTTTGTCT TCTGGAAGGAATATGGCGAGTCTGTCGGATTCCGTTATGTAGCCAGTGGTCCTCTGAACCCAATGCTTGCTGCAGAAGTGAGTCTGCTAGAACAACGAGA AGTAGTTGGGAGGCAATTAGATAACGTATTGTTTGTGGGTCGGCATGCGCAGGTTCGGTCGTCTTATAGAGCTGGGGAACTGTTTGTGAAGACAATGGTG AAACGAGACAGGGCTATTGCGGCGGGCGCAGCAACAACAAGCTAA
AA sequence Show only first row Show all	>Lus10013451 pacid=23155161 polypeptide=Lus10013451 locus=Lus10013451.g ID=Lus10013451.BGIv1.0 annot-version=v1.0 MATMMIQKQFLSSNCSMVHHPTPTNAVSSSHSFLSIRLSRSWRIRVDLASGSTTSSSSSSSSSSAAALGPFTGRDPNVKKPEWLRQKAPQGHRFDDVKKT LSKSNLSTVCEEAQCPNIGECWNGGSDGISTATIMLLGDTCTRGCRFCAVKTSRNPAPPDPAEPYNTALAIASWGVDYIVLTSVDRDDLPDGGSGHFART VMALKEVKPEIMVECLTSDFRGDLEAVDTLVHSGLDVFAHNVETVKRLQRIVRDPRAGYEQSLSVLKHAKLNKDGMITKTSIMLGLGETDEELKETMADL RAIGVDILTLGQYLQPTPLHLTVKEYVTPEKFVFWKEYGESVGFRYVASGPLNPMLAAEVSLLEQREVVGRQLDNVLFVGRHAQVRSSYRAGELFVKTMV KRDRAIAAGAATTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08415			Radical SAM superfamily protei...		Lus10013451 [exp]	0	1
AT2G38610			RNA-binding KH domain-containi...		Lus10003241 [exp]	2.4	0.6786
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	27.2	0.6421
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	48.6	0.6293
AT2G41020			WW domain-containing protein (...		Lus10027285 [exp]	61.8	0.6191
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	71.2	0.5744
AT5G24500			unknown protein		Lus10015567 [exp]	74.0	0.5752
AT5G06440			unknown protein		Lus10029362 [exp]	82.2	0.5908
AT1G72880			Survival protein SurE-like pho...		Lus10037627 [exp]	88.1	0.6059
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	137.1	0.5695

Compare expression of checked genes

Lus10013451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.