Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50410 983 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G20010 904 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT5G08390 837 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 828 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61140 742 / 0 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G11100 682 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT3G16600 580 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G61210 487 / 6e-148 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 449 / 6e-136 Transducin/WD40 repeat-like superfamily protein (.1) AT5G43530 334 / 4e-94 Helicase protein with RING/U-box domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041008 [exp] 1720 / 0 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 1148 / 0 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10011211 [exp] 779 / 0 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10018458 [exp] 473 / 1e-142 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 470 / 7e-141 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018465 [exp] 442 / 6e-132 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10043365 [exp] 338 / 2e-96 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041006 [exp] 286 / 7e-89 AT1G11160 168 / 5e-49 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039001 [exp] 309 / 2e-88 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000700 [exp] 1151 / 0 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.008G002300 [exp] 1114 / 0 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 1004 / 0 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G037700 [exp] 814 / 0 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.011G046400 [exp] 798 / 0 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.011G045500 [exp] 488 / 3e-150 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.004G189400 [exp] 321 / 3e-91 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 313 / 2e-89 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 313 / 3e-89 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.014G154600 [exp] 267 / 3e-74 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013452 pacid=23155117 polypeptide=Lus10013452 locus=Lus10013452.g ID=Lus10013452.BGIv1.0 annot-version=v1.0 ATGAATGCCATCGCTGGGAGGGGACTTTCACCTCTTGGCCATCCTCTTAATAACCTCTCTGAGGTAAGAAATCGTGATCTGGTTGAAGCAAGGGGCATTC CCTGTCTGATTGCAATGGCAGCAAAGCAGCCTATAGATATCAGTTCTGATAGTGATCTGGGGCTGGATGATGATGACGATGACTTGGACGGGGCCGTCAG ACAAAATGGTAAACCTGGTAACCTGAGAGCTGGTAACTCTAGGATTGCTAATGTTTCTAGTGGCGAGCAAGCTTTGAAGCGGACCCTTCCAATGTCTCTA GATGGAGCTGCGCCAAGTTACAAAATGAACAGGTTAGCTGATAATGCAGCTAGCAGCCAGACACATGGTGTTCATCGCAATGGCTACAATCCCTCAATAG CAGGCAGTAGCCAGGACTACCCTCACGGCCGCTACAGCCATGTTGGTAATGAAGACGTTATGATATATGATAAAAATGTCGGCAGGGCTCTTCCTCAGTC ATGGACGCATGTTAAGTCTACCTTGCCTGCACATTTGGCTGGTTCAAGTGACCATGGATACGCTTCCATGGTAGGTGATGAAAGAACTGCTGAATGTGAT GAGAGGTTAATCTATCAAGCAGCACTACAGGGTATTAATCAACCAAAGATGGAAGCCAACTTACCTGAAGGTTTATTATCTGTGCCACTTCTGAAACACC AGAAAATTGCATTGGCGTGGATGCTTCAGAAGGAGACGAGAAGCTTACACTGTTTAGGTGGAATTTTAGCTGATGATCAGGGTCTTGGGAAAACCATATC AATGATTGCCCTTGTACAGATGCAGAAGTATTTGGAGTTGAAATCTAAGTCAGAAGATCAAAATGCACGAAATACTGAAGCACTGAATTTGGATGACGAT GATGATTGCAGCACTGTTGCCTCAGATAAAATGAAACAGTCAGCTGAAATTAAGGATACCGTAATAACTGAACAAGTAAATACTTCACAGGCACTGATTA GAAGGAGACCTGCTGCTGGTACATTGGTTGTGTGCCCAGCAAGTGTTCTCCGCCAGTGGGCTAGGGAGTTGGATGATAAAGTTGCGGAAAAGTCTAAACT GTCCGTCTTGATATACCACGGAGGTACTAGAACAAAAGATCCTGTTGAATTGGCAAAGTTTGATGTCGTTATGACGACATACGCCATAGTTACTAATGAA CTTCCCAAGCAACCTTTGGTTGATGATGATGAACTTGATGACAAAACTGCAGAAAAAAGTGGTCTGTCTTCTGCATTTTCAGTTGATAAGAAGGGGAAAA AACTGCTTGGTACCAGCAAGAAGAGGAAGATGGGCACAAAGGGATCAGATTTCTCTTCTCTTGATTATGATTGCAGTCCACTTGCAAGGGTGGGTTGGTG TAGGGTGATTCTAGATGAAGCTCAAACAATAAAAAATCATCGAACCCAAGTGGCCAGGGCTTGCTGTAGCCTTCGTGCTAAAAGGAGATGGTGCCTATCT GGAACGCCTATACAGAATTCTATTGATGATTTGTACAGCTATTTCAGATTTCTCAGATATGAACCGTACTCGGGGTACAAATCATTTTGCAGTGCCATAA AGCTCCCAATATCTAGAAATTCACTTCATGGCTACAAGAAGCTGAGAGCAGTTTTAGCCGCAGTAATGCTGCGCCGTACTAAAGGGACATTGATAAATGG GGAGCCTATAATCAGATTGCCTTCGAAATCAATATGTTTGAGGAAGGTGGAGTTCTCGATCGAGGAGCGGGCTTTCTACACCCAGCTAGAAGCTGATTCG CGTTCTAAGTTCAAGGCTTATGCTGCTGCTGGCACTGTAAATCAAAACTATGCAAATATTCTTTTGATGCTTTTGCGCCTTCGGCAGGCTTGTGACCACC CACTTCTTGTCAAAGGTTTCAATTCCGACTCTGTACAAAAAGTATCAGTGGATATGGCAAATAAACTTCCAAAGGAAATGGTGATGGATCTCTTAAGTAG ACTGACTACTTCTCTGACTATTTGCCGTGTATGCAATGATCTGCCCGAGGACCCTGTTGTTACAATGTGTGGTCATGTTTTCTGTTATCAGTGTGTGTCA AATTACTTGGCAGGGGATGATAACACCTGCCCTGGTGCTGATTGCAAAGAACAGCTTGGTGCTGATATTGTCTTCTCGGAAGCTACGTTGAGAAGTTGCA TGTCTAACAATGGTGATGCAGGTCGTTCTCGATCCAACTTTGATGAGATAATGGAGAGTGAGTATAGCTCTTCAAAAATCAGAGCTATTCTTGAGATTCT TTTCTCACATAGTGACATGAGTGAACCTGATGACGTAGATTGCACAGTTGTGAGCTCTGTTCCTAAGGGACCTATAAAATCGATAATTTTTTCACAATGG ACTGGCATGTTGGACTTGGTTGAGCGCTCGCTGAAAGAGACTGGCCTAGCGTATAGGAGACTTGATGGCACAATGAGTTTAAATGTGAGAGACAAGGCTG TCAAAGATTTCAATACAAATCCCGAGGTAACGGTAATGCTGATGTCACTCAAGGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGTCACGTTATCCT TCTGGATCTTTGGTGGAATCCAAGCACAGAAGATCAGGCAGTTGACAGAGCACATAGAATCGGACAGACTCGGCCAGTTACTGTAACCCGGCTCACCATT GCAGACACTGTGGAGGATAGGATACTAGCTTTGCAGATTGGGAGGAAATCCTCTAGGCTTCTTGTCACTGGTGGTGAAGATCACAAGGTTAATCTGTGGT CCATTGGCAAACCCAATGCCTTATTGAGTCTGTCAGGACATACAAGTGGAATTGATTCGGTTGGTTTTGATTCTTCTGAAGTCTTAGTAGCCGCAGGTGC TGCCAGTGGTACCATCAAACTTTGGGATTTAGAGGAGGCCAAGATTGTCCGTACCCTCACCGGCCATAGATCCAACTGTATTTCTGTGGACTTTCACCCT TTCGGAGAGTTCTTTGCATCTGGTTCCTTGGATACTAATCTGAAGATATGGGACATCAGAAAGAAGGGCTGTATCCACACTTACAAGGGCCACACTAGAG GAGTCAATGCCATTAGATTTACTCCAGATGGTCGTTGGGTTGTATCCGGTGGAGAGGACAACACTGTCAAGCTGTGGGATCTGACTGCCGGCAAGCTATT GCATGATTTCAAGTGTCATGAGGGCCAAATTCAATGCATAGATTTCCATCCCCACGAGTTCCTTTTGGCGACAGGATCTGCTGATAAAACTGTTAAATTT TTTGATCTGGAAACCTTTGAATTAATCGGTTCTACTAATCCAGAGGCATCTGGAGTACGTTGTTTGACCTTTAATCCTGATGGTAGGAACATCCTCTGTG GTTTTCATGAAAGTCTGAAGGTTTTCTCTTGGGAACCAATTAGATGTCACGATGCTGTTGATGTGGGATGGTCCAAATTGTCAGATCTGCATGTCAATGA GGGAAAACTCCTTGGGTGTTCTTATAATCAAAGCTGTGTAGGAGTATGGGTAGTGGACACCTCGCGCATAGAACCATATGCAATTGGAAATTCTCAGAGG TTCAGTAGTCACGTGGAAACTAAAGCTAATGCAGCAGGGAATCAATCATCATTGACTGAGAAAAATGCAAAATCAAGTTTGGGGAGGATAACGGTTTCTC AAGTTGCAGACTCATTAGTAAATGAGACCAAGTCGCTTGGTAGATTGTCTGTCTCTTCAAATTCTGATAGCTCTAAAGATTTACCAAAGGAGTCAAAGAT CTTAGCACCCGTGGGAAGTGTACCTGGTACTCCTCAAAAGGTCAGCTTAAACACTGGCGTGAAAGCATTGACCAATTCCACAACATTTCCAAGTACTGCA GTCACAAAGAAGAATTATATGAAAGTGAATCCAGCTGTGAGTAGTCCAGTCCTTAGTAAGGCAGAAGTCATACCTGTTATTGTGCCTAGAACTAGTGCAA GGTCGGAACATAGCTCTGATTCGAGAAAGGAGGCTAGTATCAGCGGAAGATCAATGCCATTTCCGGTGCAGTCAAAGACAACTGATTTTCGAAGGTTCCC AATTAGTAGTGATGACATAGACCAGCCAACTATCTCTGCCCAGCCTGGTCCTTTGGGAACAAATATGGTAGATAGACCACTTTTTCCTACAGCTAAGCGC TCAATTCATGGAGTTCTGGCTGCTGAAAGAAGTATGAAGGATGGGAGATTGATTGCATCAAGAACACAAGAATCAAGTTTCCTGGCAGATGTACCTACAA CCTATCCTGACGAAACTTATGAGAATCGTGGCCATAAATTAATTAGGGATTTACCTCCAAATGAAAGCCAAAAAGGAGGAAGAATGCGCCCACTTGTGCT TAATATGGGGAAAAAAGGAAGATCAAATTATCAGGGCCATATATCTGATATTTCACCTGGGCGAGCGTCCACGGTTGTTCTCCCTCGTAATAGAGTATGG TTTACTACTTTGTTTTTCTATTTCATATGGCACCGTAGTGGTATTCGTCTATGCCCAACAACATTTGTTCAAAAGAGATCTCTTGCATGCATACTCAAAA TGAAACTGAAAAAGAAAAGACAAGCTTCTTTGAACTTTAACCAGAGAGAATACACTTCATCTCCTGAAGCAGAAACAGTTTTGGGCACTGATGAGGATTA TATCGCTGATGTAATGGAACCGCATTGCCAATTCGTGAGCTCTATGCAATCTCGATTAGCAAAACTACAGGCTGTCTATAGATACTGGGAACGGAGTGAT GTCAAGGGGGCGATCAGTGCAATGGAGAAGATGGCTGATCATGCGGTTCTTGCTGATGTAACCAGTATCATTGCTGAGAAAATTGACATTGTCACATTGG ACATTTGCACATATCTTCTGCCAGTTTTAACATGCCTTCTCGAGAGTAAAATTGATCGACACTTGAGCATCTCAATGGACTTGCTGCTGAAGTTGGTTCG AACATTTGGGACCATGATCTACACAACTGTATCGGCATCCACCACTGTCGGTGTAGACATTGAGGCAGAGAGAAGGTTGGAACGATGTAATCTTTGCTTC GTAGAGCTAGAAAAGGTGAAGCGTTGCCTTTCTACATTCACAAGACGAGGAGGCTCGGTAGGGAAGTGTGCACAGGAGTTGAATTTGGCTTTACAAGAAG TATCATGA
AA sequence Show only first row Show all	>Lus10013452 pacid=23155117 polypeptide=Lus10013452 locus=Lus10013452.g ID=Lus10013452.BGIv1.0 annot-version=v1.0 MNAIAGRGLSPLGHPLNNLSEVRNRDLVEARGIPCLIAMAAKQPIDISSDSDLGLDDDDDDLDGAVRQNGKPGNLRAGNSRIANVSSGEQALKRTLPMSL DGAAPSYKMNRLADNAASSQTHGVHRNGYNPSIAGSSQDYPHGRYSHVGNEDVMIYDKNVGRALPQSWTHVKSTLPAHLAGSSDHGYASMVGDERTAECD ERLIYQAALQGINQPKMEANLPEGLLSVPLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALVQMQKYLELKSKSEDQNARNTEALNLDDD DDCSTVASDKMKQSAEIKDTVITEQVNTSQALIRRRPAAGTLVVCPASVLRQWARELDDKVAEKSKLSVLIYHGGTRTKDPVELAKFDVVMTTYAIVTNE LPKQPLVDDDELDDKTAEKSGLSSAFSVDKKGKKLLGTSKKRKMGTKGSDFSSLDYDCSPLARVGWCRVILDEAQTIKNHRTQVARACCSLRAKRRWCLS GTPIQNSIDDLYSYFRFLRYEPYSGYKSFCSAIKLPISRNSLHGYKKLRAVLAAVMLRRTKGTLINGEPIIRLPSKSICLRKVEFSIEERAFYTQLEADS RSKFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKGFNSDSVQKVSVDMANKLPKEMVMDLLSRLTTSLTICRVCNDLPEDPVVTMCGHVFCYQCVS NYLAGDDNTCPGADCKEQLGADIVFSEATLRSCMSNNGDAGRSRSNFDEIMESEYSSSKIRAILEILFSHSDMSEPDDVDCTVVSSVPKGPIKSIIFSQW TGMLDLVERSLKETGLAYRRLDGTMSLNVRDKAVKDFNTNPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPSTEDQAVDRAHRIGQTRPVTVTRLTI ADTVEDRILALQIGRKSSRLLVTGGEDHKVNLWSIGKPNALLSLSGHTSGIDSVGFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADKTVKF FDLETFELIGSTNPEASGVRCLTFNPDGRNILCGFHESLKVFSWEPIRCHDAVDVGWSKLSDLHVNEGKLLGCSYNQSCVGVWVVDTSRIEPYAIGNSQR FSSHVETKANAAGNQSSLTEKNAKSSLGRITVSQVADSLVNETKSLGRLSVSSNSDSSKDLPKESKILAPVGSVPGTPQKVSLNTGVKALTNSTTFPSTA VTKKNYMKVNPAVSSPVLSKAEVIPVIVPRTSARSEHSSDSRKEASISGRSMPFPVQSKTTDFRRFPISSDDIDQPTISAQPGPLGTNMVDRPLFPTAKR SIHGVLAAERSMKDGRLIASRTQESSFLADVPTTYPDETYENRGHKLIRDLPPNESQKGGRMRPLVLNMGKKGRSNYQGHISDISPGRASTVVLPRNRVW FTTLFFYFIWHRSGIRLCPTTFVQKRSLACILKMKLKKKRQASLNFNQREYTSSPEAETVLGTDEDYIADVMEPHCQFVSSMQSRLAKLQAVYRYWERSD VKGAISAMEKMADHAVLADVTSIIAEKIDIVTLDICTYLLPVLTCLLESKIDRHLSISMDLLLKLVRTFGTMIYTTVSASTTVGVDIEAERRLERCNLCF VELEKVKRCLSTFTRRGGSVGKCAQELNLALQEVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50410			SNF2 domain-containing protein...		Lus10013452 [exp]	0	1
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10028871 [exp]	1.0	0.9467
AT5G23430			Transducin/WD40 repeat-like su...		Lus10041007 [exp]	1.4	0.9451
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	2.4	0.9362
AT5G05520			Outer membrane OMP85 family pr...		Lus10040946 [exp]	4.5	0.9092
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	5.7	0.9275
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10025869 [exp]	8.8	0.8733
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	11.3	0.9118
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030848 [exp]	11.4	0.9209
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Lus10015655 [exp]	11.7	0.9130
AT1G50710			unknown protein		Lus10043109 [exp]	13.1	0.8845

Compare expression of checked genes

Lus10013452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.