Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23400 492 / 4e-169 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 197 / 2e-56 Leucine-rich repeat (LRR) family protein (.1) AT1G33590 188 / 2e-53 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 185 / 3e-52 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 164 / 8e-45 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 160 / 5e-43 Leucine-rich repeat (LRR) family protein (.1) AT5G01890 160 / 2e-41 Leucine-rich receptor-like protein kinase family protein (.1) AT4G36180 160 / 2e-41 Leucine-rich receptor-like protein kinase family protein (.1) AT1G33612 150 / 8e-40 Leucine-rich repeat (LRR) family protein (.1) AT4G20140 154 / 2e-39 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041013 [exp] 898 / 0 AT5G23400 552 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041010 [exp] 891 / 0 AT5G23400 557 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002936 [exp] 183 / 1e-51 AT1G33590 594 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037955 [exp] 159 / 2e-41 AT3G47570 462 / 6e-151 Leucine-rich repeat protein kinase family protein (.1) Lus10025223 [exp] 153 / 4e-39 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013968 [exp] 153 / 5e-39 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10025139 [exp] 152 / 9e-39 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 151 / 2e-38 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 149 / 1e-37 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001000 [exp] 511 / 1e-176 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G040200 [exp] 206 / 5e-58 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 196 / 6e-55 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G117700 [exp] 174 / 5e-47 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.016G137000 [exp] 170 / 7e-45 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G099200 [exp] 164 / 7e-43 AT4G08850 654 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G091000 [exp] 160 / 1e-41 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G117500 [exp] 160 / 1e-41 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G098900 [exp] 155 / 2e-41 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G108600 [exp] 159 / 3e-41 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013454 pacid=23155107 polypeptide=Lus10013454 locus=Lus10013454.g ID=Lus10013454.BGIv1.0 annot-version=v1.0 ATGAAGCTCTTCTTGCCATTCCTCATCCTCTACCTCTTCTTCCTCAACAACAATCCCACTGCTCAACAACCTTCATCCCACAGGCTGGCACTTCTCCAGT TCAAAGCAGCAATTCTCCAGGACACAACTGGCACACTCTCCTCCTGGGTTGGCACCACCCTCTCCGATTGGGAAGGCGTCCAATGCGACCCATCAACCGG AAAGGTCACTTCTTTAATTCTCCAAGCCCCGCCCGACGACGTCACTTCCTACATGAAAGGCACTCTCTCGCCATCACTCGGCAAGCTCACCTCTCTGGAG ACTCTGGTCATCACTGGTATGAAACACATTTCAGGCTTTATCCCTCAATCCATCTCCGACCTCCCTCGCCTCGCTAATCTGGTGATCGAAGATGCTTCCC TCCAAGGCTCCATCCCTCCATCTCTAAGCCGTCTCTCCCGTCTGACGTCCCTCTCCCTCGCTGGTAACCGCTTGCTGGGCCCCATCCCTCTCCCCATTTT CACACTCCCCAAACTCCAGCTTCTCGGTTTAGCCAGGAATTCTTTCACCGGCCGTATTATCAATGTCCCAGCAACAACACATCTTCCCTTGCAGTCTTTG GATCTTAGCCACAATTTCATTTCCGGATCCATTCCGAACAACCTCCCATCCGCATTCCCAAACCTCACTTCACTTGACCTCTCTTATAACCTCTTTTCCG ACCAGCTCCCCACTTCTCTGTTTACTACTTCATCATCCCTTCTCCAAGACATCTCCTTGGACCATAACCAGCTCTCTGGAAGCCTCCCCGTCAGCTTCAC AGGCCTTAAATCGCTAGCTCGTCTCTCGTTGAGCTCCAACCGACTCACTGGTCCCATCCCGCTTTCGATTTCCAGCTTGCAGAAGCTATGGTATCTTAAC ATTTCCAGAAATGCCTTCTCTGGACCATTCCCTGCCATTACAGGGCTTCCTTTGTTGTTGTCAGTTGACCTGTCATATAACAACTTTAGTATGGTGACCG TACCAGACTGGATCAGAAATAGACAGCTTACAGATGTCCGCCTAGCTGGATGCAAACTCAGGGGACGGCTTCCAGTATTCACCAGACCAGAATCTCTCAC TTCCTTAGACCTATCCGACAACTTCTTCGACAGCATCTCCCCCGGCTTTCTCGCCAATGCATCCACCTTGGAGAACATAAACCTGTCGCGAAACCAGCTC AGGTTCGACCTCTCGGAGTTGAGATTGCCGCAGATGGTCTCTTCTCTTCACCTGCAATCCAACCACATCACTGGCTCTCTTTCCGCTGTACTAAACAGCA GGTTCCTGAAGATCCTCAACGCTGCAAGCAACCAGATTGCAGGAGGGATACCGGTCTCGATCTCGAAGCTGCAACAGCTGGCGAGGCTGGATATAGGGAG GAACCGTGTAACGGGATCGATTCCTTTGAGCATCGGGATGCTGTCAAAACTGGAATGGCTTGACATCTCGGGGAATTTGCTGACGGGTGGAATCCCAAGT AGCTTGCTGAATGTGAAGAGTGTGAGGCATGCAAACTTCAGGGGGAATAGACTGTGTGGAGAGATCCCTCAAGGAAGGCCTTACAACACCTTCCCTGCAA GTGCTTATGCTCACAATCTATGCCTCTGTGGTAAACCCTTGCCGACCTGTCCGCCCAAGAAGTGA
AA sequence Show only first row Show all	>Lus10013454 pacid=23155107 polypeptide=Lus10013454 locus=Lus10013454.g ID=Lus10013454.BGIv1.0 annot-version=v1.0 MKLFLPFLILYLFFLNNNPTAQQPSSHRLALLQFKAAILQDTTGTLSSWVGTTLSDWEGVQCDPSTGKVTSLILQAPPDDVTSYMKGTLSPSLGKLTSLE TLVITGMKHISGFIPQSISDLPRLANLVIEDASLQGSIPPSLSRLSRLTSLSLAGNRLLGPIPLPIFTLPKLQLLGLARNSFTGRIINVPATTHLPLQSL DLSHNFISGSIPNNLPSAFPNLTSLDLSYNLFSDQLPTSLFTTSSSLLQDISLDHNQLSGSLPVSFTGLKSLARLSLSSNRLTGPIPLSISSLQKLWYLN ISRNAFSGPFPAITGLPLLLSVDLSYNNFSMVTVPDWIRNRQLTDVRLAGCKLRGRLPVFTRPESLTSLDLSDNFFDSISPGFLANASTLENINLSRNQL RFDLSELRLPQMVSSLHLQSNHITGSLSAVLNSRFLKILNAASNQIAGGIPVSISKLQQLARLDIGRNRVTGSIPLSIGMLSKLEWLDISGNLLTGGIPS SLLNVKSVRHANFRGNRLCGEIPQGRPYNTFPASAYAHNLCLCGKPLPTCPPKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	0	1
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014677 [exp]	1.0	0.9875
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10008913 [exp]	1.7	0.9773
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	2.4	0.9785
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10011561 [exp]	2.6	0.9706
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10025854 [exp]	3.9	0.9759
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	4.5	0.9767
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	4.9	0.9686
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036115 [exp]	6.0	0.9650
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10041307 [exp]	6.2	0.9455
AT3G27200			Cupredoxin superfamily protein...		Lus10022350 [exp]	6.5	0.9736

Compare expression of checked genes

Lus10013454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.