Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49960 917 / 0 unknown protein AT5G02940 202 / 4e-54 Protein of unknown function (DUF1012) (.1) AT5G43745 202 / 4e-54 Protein of unknown function (DUF1012) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041014 [exp] 1095 / 0 AT5G49960 749 / 0.0 unknown protein Lus10035805 [exp] 980 / 0 AT5G49960 1146 / 0.0 unknown protein Lus10036585 [exp] 866 / 0 AT5G49960 1029 / 0.0 unknown protein Lus10041011 [exp] 822 / 0 AT5G49960 605 / 0.0 unknown protein Lus10039407 [exp] 208 / 3e-56 AT5G43745 1019 / 0.0 Protein of unknown function (DUF1012) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G097000 [exp] 1201 / 0 AT5G49960 907 / 0.0 unknown protein Potri.013G128100 [exp] 1150 / 0 AT5G49960 927 / 0.0 unknown protein Potri.003G008800 [exp] 983 / 0 AT5G49960 1142 / 0.0 unknown protein Potri.004G223400 [exp] 965 / 0 AT5G49960 1134 / 0.0 unknown protein Potri.008G160700 [exp] 216 / 1e-58 AT5G43745 1008 / 0.0 Protein of unknown function (DUF1012) (.1) Potri.010G078600 [exp] 211 / 5e-57 AT5G43745 966 / 0.0 Protein of unknown function (DUF1012) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0582 [flax] [poplar] TrkA_C PF06241 [flax] [poplar] Castor_Poll_mid Castor and Pollux, part of voltage-gated ion channel
Representative CDS sequence Show only first row Show all	>Lus10013455 pacid=23155147 polypeptide=Lus10013455 locus=Lus10013455.g ID=Lus10013455.BGIv1.0 annot-version=v1.0 ATGGATGCGGAATCATCCTCCATTACGCCGCCGTCTCCACTTCCACCTACTACTAGCAGCAGCAGGGACTGGTTCTTTCCTTCTCCTTCCACTTTCGTCA ACCCAGATTACCCGCTTCGTGCTCGCAGCCGCAGGTTCTCTACTACACTCCCCAGAGCATCCTCTTCCTCCTCCTCCCCCACTTCTGCTCCTCCTTATCC AAGGTTCCGCCGCCGCCGCCAAGTTCACTTCCCTCACCATCTCTCCCCTAAGCCCGAACACGGTATTGCCGTTTCGTCTTCTGCTCCACTTCCGCAGGAA GAAGCTGTTCATACTCACGCCGAGACCACCACCGCTCTAAGGAAGAAACCGTGTGCTCGGTTCACATACTTTGGGCTTCAACTGCCTACTTGGTTTACGC GATGGCATTTCGCCGTTTCTGCATCGTTTCTGATAACAATTCTGGCTTCTTTGATGCACAAGAATTTCTCTTTGCGTAATCAGGTCATTGACTTGCAGGA TGAAATTTCAAGACTGAACGGCAGGTTACGAGCCTGCGATTTGTACTCTTCAATCGATTCCCGGTCACAGGAGAATGCGATTGATGATCTTCACCCTGGT CATGCCTTAAAATATTTGTCTCTTATAGCCTCACTTTCCATATTATCTATCCCTCTTCTCATTTTCAAGTATATTGATCACGTCTCCAAGTTGAGGTCTT TAGAGGTAGCTCCAGAAGAAGTTTCTTTAAGCAAGCGGCTTGCATACCGGGTGGATGTCTCTCTATCAGTCCATCCATATGCTAAACCGCTGGCCTTGCT CGTTGCCACATTGCTACTCATCTGTCTTGGAGGATTTGCTCTCTTTGGTGTCACCGACGATGGTTTAGCTGATTGCCTATGGTTGTCATGGACCTATGTT GCTGACTCCGGGAACCATGCTGACTCCGAAGGTATTGGCCCAAGGCTTGTTTCTGTTTCGATTAGCTTTGGAGGCATGCTTATCTTCGCGATGATGCTCG GACTTGTATCTGATTCCATTTCTGAGAAGTTCGATTCACTGAGGAAGGGAAGAAGTGAAGTAGTTGAGCAAAACCACACCCTTATCCTTGGATGGAGTGA TAAGCTGGGTTCACTGCTGAATCAGCTTGCAATAGCCAATGACAGTTTAGGTGGTGGGACTGTTGTAGTAATGGCTGAACGAGACAAAGAAGAGATGGAA TTGGACATTGGAAAAATGGAGTTCGACTTCAAAGGGACTTCTGTCATATGCAGAAGTGGGAGCCCTTTGATTTTGGCCGACCTCAAAAAGGTATCTGTTT CAAAGGCCCGTGCCATAATTGTGCTTGCTGAGGACGGAAATGCTGACCAGAGTGATGCTCGTGCATTGAGAACAGTCTTGAGTCTAACAGGAGTTAAAGA AGGACTAAGGGGACATATTGTCGTGGAGTTAAGTGATCTTGACAATGAGGTCCTTGTGAAACTTGTTGGTGGAGATCTTGTAGAGACGGTTGTTGCACAT GATGTAATTGGCCGGCTGATGATTCAATGCGCTCGACAGCCAGGATTGGCACAGATTTGGGAAGACATCCTTGGGTTCGAAAATTGTGAGTTTTACATCA AGAGATGGCCACAGTTAGATGGCTTGCAGTTTGAGGATGTCTTGATCAGCTTTCCTGATGCTATACCCTGTGGGGTCAAGGTTGCTTCTTGCGGTGGTAA GATTGTCTTGAATCCTGACGATTCGTACACTCTACAAGAAGGTGACGAAGTGCTTGTTATAGCAGAAGATGATGATACTTACACTCCAGCAGCATTACCC ACGGTAAAAGAAGCATCATTTGTAAACTTTGATCGATCAACGAGAAAGCCACAGAAGATTCTACTTTGTGGATGGAGGAGGGACATTGATGATATGATTG TGGTATGGAGGGGAAGTCTGCCCAAAGACTTCAATGTGCCAAAGTCTGCAGAAAGGATACTGCTGTGTGGTTGGAGAAGAGATATGGAAGATATTATCAT GGTGTTGGATGCTTTTCTTGCACCTGGTTCTGAGCTCTGGATGTTCAATGATGTTGCTGAGAATGACAGGGAAAAGAAGCTTATTGATGGTGGTCTTGAC ATCAGTAGGCTGGTCAATATATGTTTGGTTAACAGAGAGGGAAATGCAGTTATCAGGCGTCACTTGGAAAGCCTTCCCCTTGAATCTTTCGATTCGATTC TAATTTTGGCTGATGAGTCAGTTGAAGATTCAGCAATTCAAGCTGATTCTAGATCTCTCGCCACATTACTGTTAATTCGAGATATTCAGGCAAAGCGTCT CCCGTACAGAGAAGCTATGTTCACCCCAGTTGAGAGAGGGAGCTTCTCACAAGGATCCTGGATAGGGGAGATGCAACAGGCTTCTGATAAATCAGTGATA ATCAGTGAAATTCTGGACCCCAGGACTAAGAACCTATTATCCATGTCGAAGATCAGCGACTACGTGCTGTCAAATGAACTAGTGAGCATGGCACTGGCAA TGGTTGCTGAGGATCGGCAGATCAATTTCGTACTAGAAGAGCTGTTTGCAGAGGAGGGAAATGAGCTGCAGATAAGAGAAGCAGATCTATACCTGAGGGA AGGAGAAGAACTGAGCTTCTATGAGATAGTGTTGAGAGCTAGGCAGAGGAAAGAAATCGTGATTGGTTACCGTTTATGTAATGCTGAAAGAGCTGTTATG AATCCAACAGCAAAGAGCGAGAGGAGGAGGTGGTCGGTGAAGGATGTGTTTGTGGTCATAGCTGAAAAGGAATAG
AA sequence Show only first row Show all	>Lus10013455 pacid=23155147 polypeptide=Lus10013455 locus=Lus10013455.g ID=Lus10013455.BGIv1.0 annot-version=v1.0 MDAESSSITPPSPLPPTTSSSRDWFFPSPSTFVNPDYPLRARSRRFSTTLPRASSSSSSPTSAPPYPRFRRRRQVHFPHHLSPKPEHGIAVSSSAPLPQE EAVHTHAETTTALRKKPCARFTYFGLQLPTWFTRWHFAVSASFLITILASLMHKNFSLRNQVIDLQDEISRLNGRLRACDLYSSIDSRSQENAIDDLHPG HALKYLSLIASLSILSIPLLIFKYIDHVSKLRSLEVAPEEVSLSKRLAYRVDVSLSVHPYAKPLALLVATLLLICLGGFALFGVTDDGLADCLWLSWTYV ADSGNHADSEGIGPRLVSVSISFGGMLIFAMMLGLVSDSISEKFDSLRKGRSEVVEQNHTLILGWSDKLGSLLNQLAIANDSLGGGTVVVMAERDKEEME LDIGKMEFDFKGTSVICRSGSPLILADLKKVSVSKARAIIVLAEDGNADQSDARALRTVLSLTGVKEGLRGHIVVELSDLDNEVLVKLVGGDLVETVVAH DVIGRLMIQCARQPGLAQIWEDILGFENCEFYIKRWPQLDGLQFEDVLISFPDAIPCGVKVASCGGKIVLNPDDSYTLQEGDEVLVIAEDDDTYTPAALP TVKEASFVNFDRSTRKPQKILLCGWRRDIDDMIVVWRGSLPKDFNVPKSAERILLCGWRRDMEDIIMVLDAFLAPGSELWMFNDVAENDREKKLIDGGLD ISRLVNICLVNREGNAVIRRHLESLPLESFDSILILADESVEDSAIQADSRSLATLLLIRDIQAKRLPYREAMFTPVERGSFSQGSWIGEMQQASDKSVI ISEILDPRTKNLLSMSKISDYVLSNELVSMALAMVAEDRQINFVLEELFAEEGNELQIREADLYLREGEELSFYEIVLRARQRKEIVIGYRLCNAERAVM NPTAKSERRRWSVKDVFVVIAEKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49960			unknown protein		Lus10013455 [exp]	0	1
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	3.2	0.9551
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	4.2	0.9470
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	5.5	0.9353
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	5.5	0.9409
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10038088 [exp]	5.7	0.9225
AT1G02260			Divalent ion symporter (.1)		Lus10027497 [exp]	5.8	0.9296
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10016461 [exp]	6.0	0.9490
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10003365 [exp]	8.2	0.9218
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10013994 [exp]	10.4	0.9257
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	11.0	0.9400

Compare expression of checked genes

Lus10013455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.