Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19980 624 / 0 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT1G50370 622 / 0 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT4G26720 404 / 8e-143 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT5G55260 398 / 2e-140 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT1G69960 374 / 1e-130 PP2A serine/threonine protein phosphatase 2A (.1) AT1G10430 371 / 8e-130 PP2A-2 protein phosphatase 2A-2 (.1) AT3G58500 370 / 5e-129 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT2G42500 369 / 8e-129 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT1G59830 369 / 1e-128 PP2A-1 protein phosphatase 2A-2 (.1.2) AT2G29400 274 / 3e-91 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017361 [exp] 623 / 0 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10010156 [exp] 622 / 0 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10041015 [exp] 581 / 0 AT1G50370 570 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10016576 [exp] 404 / 3e-141 AT5G55260 615 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10033122 [exp] 373 / 3e-130 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10042160 [exp] 374 / 4e-130 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 372 / 8e-130 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 372 / 8e-130 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10039185 [exp] 366 / 2e-127 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G003200 [exp] 630 / 0 AT1G50370 624 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.010G254500 [exp] 622 / 0 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.011G092200 [exp] 394 / 1e-138 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 393 / 2e-138 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.015G068300 [exp] 375 / 2e-131 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 373 / 1e-130 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.003G217900 [exp] 369 / 2e-128 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 368 / 2e-128 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.008G191600 [exp] 368 / 2e-128 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 366 / 1e-127 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10013456 pacid=23155075 polypeptide=Lus10013456 locus=Lus10013456.g ID=Lus10013456.BGIv1.0 annot-version=v1.0 ATGGATTTGGATCAGTGGATTTCTAAGGTGAAGGAAGGGCAGCACCTCCTGGAAGACGAGCTCCAACTTCTATGCGAATATGTAAAAGACATTCTAATTG AGGAATCCAATGTTCAGCCTGTCAACAGTCCTGTGACTGTTTGTGGGGATATTCATGGTCAGTTTCATGATCTAATGAAGCTTTTCCAAACCGGAGGTCA TGTTCCAGATACAAATTACATATTTATGGGGGATTTTGTGGACCGTGGTTACAATAGCCTTGAAGTTTTCACTATTCTTTTATTGCTAAAAGCCAGGTAC CCTGCTAATATAACACTTTTGCGAGGGAATCATGAGAGCAGACAACTAACTCAGGTTTATGGTTTCTACGACGAATGCCAGAGGAAGTATGGCAATGCTA ATGCATGGCGTTATTGTACAGATGTTTTTGATTACCTTACACTGTCAGCTATTATAGATGGCACAGTGCTTTGTGTCCATGGTGGTCTTTCTCCTGATGT CCGGACTATTGATCAGATAAGAGTAATTGAACGGAACTGTGAAATTCCACATGAAGGACCATTTTGTGATCTTATGTGGAGTGATCCTGAAGACATAGAA ACATGGGCAGTTAGTCCCAGAGGAGCAGGTTGGCTTTTTGGATCAAGGGTTACCTCTGAGTATAACCACATTAACAATCTTGACTTGGTTTGTCGGGCGC ATCAACTTGTACAAGAAGGCCTCAAGTACATGTTTCAAGATAAGGGCTTAGTAACCGTCTGGTCTGCACCGAACTACTGTTACCGATGTGGGAATGTAGC TTCCATCCTGAGCTTCAATGAGAATATGGAGAGAGAAGTAAAGTTCTTCACCGAAACGGAGGAGAACAATCAGATGAGAGGACCAAGAACAGGAGTGCCC TATTTCCTATGA
AA sequence Show only first row Show all	>Lus10013456 pacid=23155075 polypeptide=Lus10013456 locus=Lus10013456.g ID=Lus10013456.BGIv1.0 annot-version=v1.0 MDLDQWISKVKEGQHLLEDELQLLCEYVKDILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPDTNYIFMGDFVDRGYNSLEVFTILLLLKARY PANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDVRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIE TWAVSPRGAGWLFGSRVTSEYNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVP YFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19980		STPP, ATFYPP3, ...	SERINE/THREONINE PROTEIN PHOSP...		Lus10013456 [exp]	0	1
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	1.7	0.8526
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032750 [exp]	3.7	0.8186
AT5G01010			unknown protein		Lus10029706 [exp]	9.8	0.8129
AT2G15860			unknown protein		Lus10021000 [exp]	9.9	0.7969
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	14.1	0.7835
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	16.1	0.8060
AT1G68185			Ubiquitin-like superfamily pro...		Lus10034627 [exp]	16.7	0.7714
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017650 [exp]	17.9	0.8003
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10037999 [exp]	18.1	0.8033
AT1G60460			unknown protein		Lus10036440 [exp]	23.2	0.7188

Compare expression of checked genes

Lus10013456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.