Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16800 338 / 7e-118 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) AT3G02980 305 / 4e-105 MCC1 MEIOTIC CONTROL OF CROSSOVERS1 (.1) AT5G11340 63 / 3e-12 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G39000 47 / 6e-06 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041016 [exp] 518 / 0 AT5G16800 334 / 1e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10013120 [exp] 64 / 2e-12 AT5G11340 256 / 8e-89 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10008088 [exp] 57 / 2e-09 AT5G11340 249 / 2e-85 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10040401 [exp] 50 / 7e-07 AT2G39000 386 / 3e-136 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10023517 [exp] 47 / 7e-06 AT2G39000 388 / 4e-137 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10009229 [exp] 45 / 3e-05 AT2G39000 320 / 5e-112 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10037996 [exp] 44 / 9e-05 AT2G39000 335 / 2e-115 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079900 [exp] 402 / 2e-143 AT5G16800 346 / 3e-121 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.019G050700 [exp] 395 / 6e-141 AT5G16800 334 / 2e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.006G248900 [exp] 62 / 6e-12 AT5G11340 280 / 3e-98 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.018G032400 [exp] 59 / 7e-11 AT5G11340 270 / 4e-94 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G039300 [exp] 47 / 5e-06 AT2G39000 387 / 1e-135 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.010G222900 [exp] 42 / 0.0001 AT2G39000 370 / 5e-130 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10013457 pacid=23155094 polypeptide=Lus10013457 locus=Lus10013457.g ID=Lus10013457.BGIv1.0 annot-version=v1.0 ATGGCAAGGCCCAAAGTCTCCCACCGTCCAAGCATATGCTTCAGGGCTATACTCCCCTCTGATCTGGAGATTTTAGAGCGAATGCATACTGAAATATTTC CGATTAGGTACGAATCTGAGTTTTTCCAACATGTTGTCAATGGACATGATATTGTGTCCTGGGCAGCCATTGATCGTGGTCGGCCCAATGGTAATGGTGA TGAAATGATAGGATTTGTTACTGCAAGGATTGTGTTAGCAAAAGAAAGCGAGATAGGAGATTTACTTAGATATGACCCGTCTAGACCCGATCAGACATTA CTCTACATTTTGACACTTGGAGTAGTTGATACCTACAGAAATCTTGGTATAGCATCTTCTCTTATCCGTGAGGTGACCCAATATGCTTCAAGTATTCGAA CGTGCCGTGCAATTTACTTGCACGTAATATCATACAACATTGCTGCAATCCAGTTATATAAAAAAATGTCATTCAGGTGTATACGGAGGCTGCAAGGTTT TTATTTCATCAACGGACAACATTATGATTCTTTCTTGTTCGTTTACTACGTGAATGGTGGTCGTTCTCCATGCTCACCATTAGAGTTTGTCACATATTTA TTGGCTTACATGAGGAGTGGTCTGAAGTCGGTTGCATCGAGGCTAAAGAAGAGAGATGACCGGTTGCCGAAATGGCCAAAATGTAAAGACCCACATTCAC TTGCATCGTCGCAAAGCAAGAGAAATCTGACAGCAGAATGTAGTGGGTATGAATCTGTATGA
AA sequence Show only first row Show all	>Lus10013457 pacid=23155094 polypeptide=Lus10013457 locus=Lus10013457.g ID=Lus10013457.BGIv1.0 annot-version=v1.0 MARPKVSHRPSICFRAILPSDLEILERMHTEIFPIRYESEFFQHVVNGHDIVSWAAIDRGRPNGNGDEMIGFVTARIVLAKESEIGDLLRYDPSRPDQTL LYILTLGVVDTYRNLGIASSLIREVTQYASSIRTCRAIYLHVISYNIAAIQLYKKMSFRCIRRLQGFYFINGQHYDSFLFVYYVNGGRSPCSPLEFVTYL LAYMRSGLKSVASRLKKRDDRLPKWPKCKDPHSLASSQSKRNLTAECSGYESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	0	1
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10001916 [exp]	2.0	0.9285
AT2G32760			unknown protein		Lus10016662 [exp]	2.4	0.9294
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Lus10020897 [exp]	3.5	0.9184
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10015707 [exp]	5.7	0.9065
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10016999 [exp]	8.0	0.9242
AT5G59210			myosin heavy chain-related (.1...		Lus10040740 [exp]	8.4	0.8691
AT4G19003		VPS25	E2F/DP family winged-helix DNA...		Lus10012273 [exp]	10.2	0.9153
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	11.0	0.9195
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	11.5	0.9251
AT4G30830			Protein of unknown function, D...		Lus10036599 [exp]	11.5	0.8821

Compare expression of checked genes

Lus10013457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.