Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013458 pacid=23155099 polypeptide=Lus10013458 locus=Lus10013458.g ID=Lus10013458.BGIv1.0 annot-version=v1.0 ATGATGAATTGGACAAGTGTTCAAGTAGCAGTGAAGAGGAGGAAGAAGAAGGCACATGAGCAGTGGTACGGTATGGCCCTCCAGTCCTCCCCTTTCTCTC TATTCCTCCCATGTGATGTGCCTGCCTGCAATCCGGTGAATGGTGCCGAATCCTCCTTTGTTAGTCAACGCCAACCAATCAGGTTTAGAAACCATTTTCC CATTCAGCTGTTGTATTGTATTGATGCCCTTTTTATTCACCTGCGTACTCTGGTTATCTTAAGAGTCCACACTCACTTGGGCGACGGCAGGAATGTGAAT GCTGGACTTGAAGTCCAGTAG
AA sequence Show only first row Show all	>Lus10013458 pacid=23155099 polypeptide=Lus10013458 locus=Lus10013458.g ID=Lus10013458.BGIv1.0 annot-version=v1.0 MMNWTSVQVAVKRRKKKAHEQWYGMALQSSPFSLFLPCDVPACNPVNGAESSFVSQRQPIRFRNHFPIQLLYCIDALFIHLRTLVILRVHTHLGDGRNVN AGLEVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013458 [exp]	0	1
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10016929 [exp]	5.5	0.7851
AT3G54400			Eukaryotic aspartyl protease f...		Lus10039503 [exp]	9.5	0.7597
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	12.8	0.7361
AT5G27220			Frigida-like protein (.1)		Lus10033831 [exp]	23.6	0.7325
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	27.6	0.7407
					Lus10042511 [exp]	45.2	0.6904
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	52.6	0.7007
AT5G63410			Leucine-rich repeat protein ki...		Lus10029659 [exp]	56.4	0.6769
AT1G62520			unknown protein		Lus10032250 [exp]	57.2	0.6333
AT5G28150			Plant protein of unknown funct...		Lus10020240 [exp]	66.1	0.6650

Compare expression of checked genes

Lus10013458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.