Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25140 638 / 0 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT4G31890 569 / 0 ARM repeat superfamily protein (.1.2) AT5G15450 545 / 2e-176 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT2G25130 475 / 4e-156 ARM repeat superfamily protein (.1) AT1G74310 340 / 2e-100 HOT1, ATHSP101 heat shock protein 101 (.1) AT3G48870 317 / 7e-92 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G50920 312 / 3e-90 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT1G30110 234 / 8e-71 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT5G51070 243 / 2e-66 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT4G14670 196 / 1e-52 CLPB2 casein lytic proteinase B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041017 [exp] 921 / 0 AT4G31890 621 / 0.0 ARM repeat superfamily protein (.1.2) Lus10041018 [exp] 720 / 0 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10030705 [exp] 543 / 2e-175 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10013191 [exp] 543 / 6e-175 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10040527 [exp] 333 / 2e-101 AT1G74310 906 / 0.0 heat shock protein 101 (.1) Lus10021159 [exp] 333 / 8e-99 AT1G74310 1421 / 0.0 heat shock protein 101 (.1) Lus10040528 [exp] 326 / 2e-95 AT1G74310 1496 / 0.0 heat shock protein 101 (.1) Lus10003714 [exp] 298 / 8e-94 AT1G30110 275 / 6e-96 nudix hydrolase homolog 25 (.1.2) Lus10032544 [exp] 305 / 1e-89 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262700 [exp] 639 / 0 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.006G263100 [exp] 619 / 0 AT4G31890 545 / 0.0 ARM repeat superfamily protein (.1.2) Potri.017G090600 [exp] 560 / 0 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.004G124800 [exp] 556 / 2e-180 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.015G057000 [exp] 353 / 6e-105 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 352 / 1e-104 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.012G105900 [exp] 314 / 7e-91 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 311 / 7e-90 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.010G112000 [exp] 248 / 5e-76 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2) Potri.008G130100 [exp] 247 / 1e-75 AT1G30110 300 / 8e-106 nudix hydrolase homolog 25 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10013459 pacid=23155141 polypeptide=Lus10013459 locus=Lus10013459.g ID=Lus10013459.BGIv1.0 annot-version=v1.0 ATGGATGGTTTGCCTTCTGGGTATCGCCCAAATGTCGGCGTCTGCCTCATCAACCCTGATGGCCAGGTGTTTGTGGTTTCTAAGCTGAATGTTCCAGGAG CCTGGCAAATGCCTCAGGGAAGTATTGAAGAAGATGAGGAGCCAATGACTGCAGCAATCAGGGAGTTGAGGGCAGAAACTGGGATCACGTCTGGAGAAAT CGTTACTGAGGTCCCTAAATGGCTGACTTACGACTTCCCACCTGCTGTCAAGGCCAAAGTCAATCGCCTCTGGGGTGGAGAATGGCACGGCCAAGCTCAA AAATGGTTCCTGATGAGATTAACAAAAGACGAGGATGAGATCAACTTAGAGAACGGGGAGGCAGACTCCGAATTCTCGGAGTGGAAATGGGCTAGCCCCG ATGAAGTTGTCGAGCTGATTTCGGACAGTGCACTTGTTGCGCCTGCAGTTCTTGCTGACATATATATCACCGAGCGTTTTCTCCCCGATGAAGCAATTGA TCTCGTCGATGAAGCGGCTGCAAAGCTGAAAATGGAGATAACTTCTAAGCCTACAGAGTTAGATGAAGTAGATCGAGCTGTCTTGAAATTGGAGATGGAA AAGCTATTTGTGAGAAATGACACCGATAAGGCATCAAAAGAGAGACTGAGCAAGCTCGAGAACGATCTCAACTTACTGAAACAAAAGCAGAAAGAACTTA ACGAACAGTGGGCCGTGAGAAAGATTGATAGAGTAAATTTGGAAATGGAAGCTGGTGAACGGGAGTATGACCTGAATCGTGCTGCAGAGCTCAAGTATGG AACTTTAATGTCCCTTCAACGCCAGCTTGAAGAGGCTGAGAAAAATCTGGCCGAGTTCAGGAAGTCAGGAAGTTCCTTGCTCCGTGAAGAGGTTACCGAC ATTGATATTACTGAGATAGTTAGCAAATGGACCGGTATACCTCTATCAAACCTCCAACAATCAGAGAGGGAGAAGTTGGTCTTGCTAGAAGAGGTACTCC CCAAGAGGGTGACTGGTCAAGACATGGCAGTAAAGTCAGTAGCTCATGCAATTAGACGGTCAAGAGCAGGTTTATCGGATGCAAATCGACCAATTGCCAG CTTCATGTTCATGGGACCAACTGGCGTTGGCAAGACGGAGCTTGGAAAGGCTCTGGCTTGCTATCTATTCAATACAGAAAACGCACTTGTGAGAATAGAT ATGTCCGAGCACATGGAGAAGCACGCAGTCTCCCGCTTAGTTGGGGTATCACCAGGTTACGTTGGTTACGAAGAGGGTGGGCAGCTTACTGAAGTAGTTC GTCGCAGGCCCTACTCGGTAGTACTTTTCGACGAAATAGAGAAAGCACACCATGATGTGTCCAACATCCTGTTACAGCTGTTGGATGACGGAAGGATAAC AGATTCTCAAGGGAGGACTCAAGGTGTGGATCTCGCAAGACAGACTTTCCGTCCAGAGTTCATCAACAGGATGGACGAGTATATTGTTTTCCAACCCCTG GACTCCACAGAGATGAGTAAAATCGTCGAGATGCAGCTGAAGCGGGTGAGGGAAAGGCCGAAGCAAAGGAAGATCGAAGTTAAGTACACAAAGGAAGCGG CGGCTGTGTTGGCAGCACTGGGATTGGATCCAAACTTTGGAGCACGACCGGTGAAGAGGGTGATACAGCAGTTGGTGGAGAATGAAATAGCAATGGAAGA CACTCTGGTTGTGGATTCAGATCCGTTGAAGCAGTTGGTTATAAGGAAACTGGAGAGCAGTCCGGAGATGGAAGACGGTCGCAATATGAGTATGGAACTG GAAAGCAACCATGGCGGGCCGTGTTGTTGGAAAGGCAGTGGAGGATATGCTTCAAACAAGGAGTGGTGGTTGAAATCCAGCATAAATCTGACCACCATAG ATCAGAAGCACACACTCCCAGACACAGCAAACAAAAGCTTCGCCGCAGAGCTTCCGACTCCGGAGTCCGGACAAACTCTCCGCCTCCTCCTTCCTTTTGT TCCTTTCCGCTGCTACTATCTCTGCTCCCCTCTTCAATGTACGTGGTGTTGCTTTCTCACTGAAATGGCCAAGTGTCACCGCAGCAACACCAACAACATC GGATCCCTAGTCTTGGATCACTCTCCAGCCACCGGCGCCACCGGGAACGGTCAGTTCCGCTTCTGGACGGCCTTCTCCGTCGCTGCATTTCGCCGCAAGA TCTTCGACGCCGTCAGCTGCGGCGGGAGCTCCCGTTACGGTCATCGTCACGATCTCGATGATCTTATCGACGAGATTTCCTCCGGCGTAACCGCAACCAG CTCAGCCGGCGAGATTACTACTACTGTTGCGAGTGGACGCACGTGCGAGAAAGCCGCGGCGAGGAATGTGAAATCGGAGAGGCTGTCAGATCTCTTGAGC ATTGCCGAGTGTGAGAGCGAGGCGGAGACGAACAAGAAGGTAGAAGCGTTGGAGGAGTTGAAACGAGCGGTCATGGAATTGCAGTTGGAAGATGAAGACG AAAGGAAGAAATTAGCTGCTGCTCGTAGGGTCAGGTTACTGGCTAAGGAAGATTCGGGAGCCAGAGTCACCCTGGCTATGTTAGGAGCCATTCCGCCGCT CATCGGCATGCTCGATTTGGAAGACGCCGATTCTCAGATCGCATCACTCTATTCCTTACTCAATCTGGGTATCGGAAACGACGCGAACAAAGCTGCCATT GTGAAAGCAGGGGCAGTGCATAAGATGCTAACGATTATAGCATCTCCAAATACTCCTAACCCATTGGTATCAGAGGCAATAGTAGCTAATTTTCTCGGGT TGAGCGCATTGGACTCCAATAAACCTATCATTGGTTCGTCAGGTGCAATCCCTTTCTTGTTTGGCACCTTGAAGGATTCAGATCATAAGAGCAGCTGTCA AGCGAAACAAGATGCTCTGAGGGCTCTTTACAACCTCTCAATTGACCCATTGAATGTAACATTTATCCTAGAAACTGATATAGTCCAGTATCTCCTCAAT GTGCTGGGGGACATGGAAGTAAGTGAAAGGGTCCTTTCAATTTTGAGCAACGTCGTATCAACCCCAGAAGGTAGAAAGGCAATGAGCAGTGCACAAGATG GGTTCTTGATCCTGGTTGATGTGTTGAACTGGACCGATTCACCGGGTTGCCAAGAGAAAGCCTCTTACATATTGATGGTAATGGCACATAAATCTTATGG AGATAGACAAGCAATGATCGAAGCAGGAATCATGTCTGCTTTGCTTGAATTGATGCTTTTGGGGAGCACTTTGACGCAGAAGAGAGCTTCGAGGATACTT GAGTGTCTTAGAGTAGATAAAGGGAAGCAAATATCAGAGAGTTATGGTGGGAATGTGGGGGCAGCAGTTTCTGCTCCAATATGTGGTAGCTCATCGGCAT CCTCTGGTCAGCCACATGATGTTTTGAAGGAGTGCTCGTTGGAGGTGGAAGGCATGATGAGCGAGGAAAAGAAGGCTGTGAAGCAATTAGTACAACAAAG TTTGCAGAGCAACATGAAGAGGATTGTCAAGAGAGCCAATCTGCCGCAGGATTTTGCTCCGTCTGAGCATTTCAAGGCACTCACAGCAAGTTCAACCTCC AAAAGTTTGCCATTTTGA
AA sequence Show only first row Show all	>Lus10013459 pacid=23155141 polypeptide=Lus10013459 locus=Lus10013459.g ID=Lus10013459.BGIv1.0 annot-version=v1.0 MDGLPSGYRPNVGVCLINPDGQVFVVSKLNVPGAWQMPQGSIEEDEEPMTAAIRELRAETGITSGEIVTEVPKWLTYDFPPAVKAKVNRLWGGEWHGQAQ KWFLMRLTKDEDEINLENGEADSEFSEWKWASPDEVVELISDSALVAPAVLADIYITERFLPDEAIDLVDEAAAKLKMEITSKPTELDEVDRAVLKLEME KLFVRNDTDKASKERLSKLENDLNLLKQKQKELNEQWAVRKIDRVNLEMEAGEREYDLNRAAELKYGTLMSLQRQLEEAEKNLAEFRKSGSSLLREEVTD IDITEIVSKWTGIPLSNLQQSEREKLVLLEEVLPKRVTGQDMAVKSVAHAIRRSRAGLSDANRPIASFMFMGPTGVGKTELGKALACYLFNTENALVRID MSEHMEKHAVSRLVGVSPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVSNILLQLLDDGRITDSQGRTQGVDLARQTFRPEFINRMDEYIVFQPL DSTEMSKIVEMQLKRVRERPKQRKIEVKYTKEAAAVLAALGLDPNFGARPVKRVIQQLVENEIAMEDTLVVDSDPLKQLVIRKLESSPEMEDGRNMSMEL ESNHGGPCCWKGSGGYASNKEWWLKSSINLTTIDQKHTLPDTANKSFAAELPTPESGQTLRLLLPFVPFRCYYLCSPLQCTWCCFLTEMAKCHRSNTNNI GSLVLDHSPATGATGNGQFRFWTAFSVAAFRRKIFDAVSCGGSSRYGHRHDLDDLIDEISSGVTATSSAGEITTTVASGRTCEKAAARNVKSERLSDLLS IAECESEAETNKKVEALEELKRAVMELQLEDEDERKKLAAARRVRLLAKEDSGARVTLAMLGAIPPLIGMLDLEDADSQIASLYSLLNLGIGNDANKAAI VKAGAVHKMLTIIASPNTPNPLVSEAIVANFLGLSALDSNKPIIGSSGAIPFLFGTLKDSDHKSSCQAKQDALRALYNLSIDPLNVTFILETDIVQYLLN VLGDMEVSERVLSILSNVVSTPEGRKAMSSAQDGFLILVDVLNWTDSPGCQEKASYILMVMAHKSYGDRQAMIEAGIMSALLELMLLGSTLTQKRASRIL ECLRVDKGKQISESYGGNVGAAVSAPICGSSSASSGQPHDVLKECSLEVEGMMSEEKKAVKQLVQQSLQSNMKRIVKRANLPQDFAPSEHFKALTASSTS KSLPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31890			ARM repeat superfamily protein...		Lus10013459 [exp]	0	1
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Lus10026984 [exp]	22.2	0.6237
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	22.2	0.6467
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10027924 [exp]	30.6	0.6648
AT5G60160			Zn-dependent exopeptidases sup...		Lus10016765 [exp]	40.6	0.6622
AT2G16760			Calcium-dependent phosphotries...		Lus10015347 [exp]	52.8	0.6403
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	94.4	0.6028
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10021458 [exp]	134.1	0.5976
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10004913 [exp]	170.5	0.5711
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10024396 [exp]	203.2	0.5566
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10004080 [exp]	261.2	0.5538

Compare expression of checked genes

Lus10013459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.