Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01480 835 / 0 O-fucosyltransferase family protein (.1) AT1G14970 801 / 0 O-fucosyltransferase family protein (.1) AT1G35510 592 / 0 O-fucosyltransferase family protein (.1) AT1G38131 529 / 0 O-fucosyltransferase family protein (.1) AT1G38065 492 / 5e-171 O-fucosyltransferase family protein (.1) AT3G26370 310 / 8e-99 O-fucosyltransferase family protein (.1) AT4G16650 295 / 2e-93 O-fucosyltransferase family protein (.1) AT1G29200 291 / 2e-92 O-fucosyltransferase family protein (.1.2.3) AT4G38390 292 / 3e-92 RHS17 root hair specific 17 (.1) AT4G24530 284 / 3e-89 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003715 [exp] 1030 / 0 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 886 / 0 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 877 / 0 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 595 / 0 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10001545 [exp] 544 / 0 AT1G35510 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 466 / 3e-161 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 460 / 3e-158 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 321 / 6e-103 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 319 / 1e-102 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130600 [exp] 875 / 0 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 868 / 0 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 613 / 0 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 521 / 0 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 500 / 1e-172 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 324 / 4e-104 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 317 / 8e-102 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.011G068300 [exp] 318 / 3e-101 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.010G048500 [exp] 309 / 8e-99 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 309 / 1e-98 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10013460 pacid=23155065 polypeptide=Lus10013460 locus=Lus10013460.g ID=Lus10013460.BGIv1.0 annot-version=v1.0 ATGCACGCCTCTAAGCGGATTCCGAGCAGCGGTCACACCTCGCCGTCGCCGCCGCACTCTCCAATCCGTTCTCCAGCTTGGCTTCTCCTCTCTGTTCTCC TCCGTCGCCAGGGGATTTTCCTGTTCGCGCCATTGATGTACATCTCAGGGATGCTTCTATACATGGGGACTGTGTCCTTCGATGTCGTCCCCCAGATTTC TAGCAAGCCTACTCCTGGCTCTGTTTATAAGAGCCCCCTCGTCTACGAGAAGCTCCGCCCTGAGATGGACGCCGATAATTCTTCTGCCGATGCGCTATTA ACTATATGGAAAAATTCATACAAAAGTGGCGAGTGGAAACCATGCGTGAAGAGGTATTTGGAAGGCATGCCGGCTTCTAATGGCTACATATATGTTGAGG CTAATGGGGGTTTGAATCAACAAAGGACATCGATATGTGATGCAGTCGCAATTGCTGGCCTCCTGAATGCAACACTTGTGATCCCTAATTTCCATTATCA TAGCATCTGGAAAGATCCCAGCAAATTCAAAGACATTTATGACGAAGAATTTTTCATCAGTGCCTTACAAAATGAAGTGAGGGTAGTTGATAAGGTTCCG GGATATCTTATGGAGCGGTTTGATCACAACTTCACCAATGTATTCAACTTCAGAGTAAAAGCATGGTCACCTATCGAATATTACAAAGATGTTGTCCTCC CCAGGCTACTAGAAGAAAAGGTTGTAAGGATTTCTCCATTTGCACACCGGTTGTCATTTGATGCTCCAACAGATGTCCAGCGCCTTAGATGTATGGCAAA TTATGTAGCTCTAAGGTTCTCAAACCCCATATCAACATTGAGTGAAAATTTAGTGGCTAGAATGAAAGATTTGAGTGCAAGCCAAGGTGGGAAATATGTT TCTGTGCATCTTCGCTTTGAGGAGGACATGGTTGCTTTCTCTTGTTGTGTATTTGATGGCGGTGCGCAAGAAGATAGAGACATGAAAGCTGCTAGGGAAA GAGGCTGGAGAGGGAAATTTACAAAGCCTGGCCGAACCATACTTCCCGGAGCAATCAGGCTTAATGGCAAGTGCCCCCTCTCTCCACTAGAGGTCGGTTT GATGCTCAGGGGAATGGGTTTCGGCAAGGACACATACATATATTTAGCTTCTGGAAAGATATACAATGCTGAGAAATACATGGCTCCCCTGCTAGAAATG TTCCCAAATTTGCAGACGAAAGAAACACTGGCCACGGCAGAAGAACTTACTCTGTTTAGGAATTTCTCTTCCAGGATGGCTGCGATAGACTATACCGTCT GTCTACACAGTGAGGTATTCGTCACAACTCAAGGCGGCAACTTCCCTCATTTCCTATTAGGCCACCGGAGATTCTTGTATGGCGGACATGCCAAAACAAT TAAACCAGACAAGCGGAAGCTAGCGTTGATGCTTGATAATACATCTTTAGGGTGGAAGAGCTTCAAACGGCAGATGCTGAGCATGCGGTCTCACAGCGAT GCCAAGGGGTTCGAACTGAAAAGAACTAACGACTCGGTATTCTCCCATCCATGCCCACATTGCATGTGCCAGATCAACAAAGCAGAAGCCTCAGCAAAAC TATCATCATGA
AA sequence Show only first row Show all	>Lus10013460 pacid=23155065 polypeptide=Lus10013460 locus=Lus10013460.g ID=Lus10013460.BGIv1.0 annot-version=v1.0 MHASKRIPSSGHTSPSPPHSPIRSPAWLLLSVLLRRQGIFLFAPLMYISGMLLYMGTVSFDVVPQISSKPTPGSVYKSPLVYEKLRPEMDADNSSADALL TIWKNSYKSGEWKPCVKRYLEGMPASNGYIYVEANGGLNQQRTSICDAVAIAGLLNATLVIPNFHYHSIWKDPSKFKDIYDEEFFISALQNEVRVVDKVP GYLMERFDHNFTNVFNFRVKAWSPIEYYKDVVLPRLLEEKVVRISPFAHRLSFDAPTDVQRLRCMANYVALRFSNPISTLSENLVARMKDLSASQGGKYV SVHLRFEEDMVAFSCCVFDGGAQEDRDMKAARERGWRGKFTKPGRTILPGAIRLNGKCPLSPLEVGLMLRGMGFGKDTYIYLASGKIYNAEKYMAPLLEM FPNLQTKETLATAEELTLFRNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLLGHRRFLYGGHAKTIKPDKRKLALMLDNTSLGWKSFKRQMLSMRSHSD AKGFELKRTNDSVFSHPCPHCMCQINKAEASAKLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01480			O-fucosyltransferase family pr...		Lus10013460 [exp]	0	1
AT2G01480			O-fucosyltransferase family pr...		Lus10003715 [exp]	6.6	0.7389
AT5G40740			unknown protein		Lus10014617 [exp]	9.1	0.7127
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10004080 [exp]	15.6	0.6588
AT1G77680			Ribonuclease II/R family prote...		Lus10025614 [exp]	20.2	0.6916
AT1G47380			Protein phosphatase 2C family ...		Lus10042659 [exp]	23.7	0.6859
AT3G08960			ARM repeat superfamily protein...		Lus10007842 [exp]	26.5	0.7060
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000272 [exp]	29.2	0.6880
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10016846 [exp]	36.6	0.6419
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10016549 [exp]	49.7	0.6660
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	59.4	0.6365

Compare expression of checked genes

Lus10013460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.