Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26030 412 / 4e-142 FC1, FC-I, ATFC-I ferrochelatase 1 (.1.2) AT2G30390 347 / 6e-116 FC2, FC-II, ATFC-II ferrochelatase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007924 [exp] 471 / 9e-164 AT5G26030 640 / 0.0 ferrochelatase 1 (.1.2) Lus10024237 [exp] 462 / 4e-161 AT5G26030 650 / 0.0 ferrochelatase 1 (.1.2) Lus10023607 [exp] 456 / 9e-159 AT5G26030 652 / 0.0 ferrochelatase 1 (.1.2) Lus10019224 [exp] 339 / 2e-112 AT2G30390 729 / 0.0 ferrochelatase 2 (.1.2) Lus10004292 [exp] 326 / 2e-107 AT2G30390 713 / 0.0 ferrochelatase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232100 [exp] 430 / 1e-148 AT5G26030 620 / 0.0 ferrochelatase 1 (.1.2) Potri.T010901 [exp] 355 / 7e-119 AT2G30390 734 / 0.0 ferrochelatase 2 (.1.2) Potri.004G138400 [exp] 353 / 6e-118 AT2G30390 747 / 0.0 ferrochelatase 2 (.1.2) Potri.T010900 [exp] 352 / 8e-118 AT2G30390 756 / 0.0 ferrochelatase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0043 [flax] [poplar] Chelatase PF00762 [flax] [poplar] Ferrochelatase Ferrochelatase
Representative CDS sequence Show only first row Show all	>Lus10013461 pacid=23155101 polypeptide=Lus10013461 locus=Lus10013461.g ID=Lus10013461.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCTTCTATCTCCGCTGCTCTTCCCCTGACGAAACTCTCCGTCTCCAGGTCGTGTTCTAAGATTGGATCAGCTAAATCCGTATCTTACCGAT CGTCTGCACCATTACAACCTCATGATAATCCGCCATCTCTCGTATTAAGGTCGTGTTCTTGTGATATGTTAACCTCCATTGACTCAGTAGCCTTAGCTCG GAGATGGAACGTTATTTCTCAATCATATACTGGCATCTGCCCCTTCCACGAGACATCTTCTGTTCAAAATCACACGACAACCACTGAAGAGACGATCGGC CTGCTGCTCCTGAACCTTGGAGGGCCAGAAAGGCTTAATGATGATATCATTCGATTACGTAGGCTGTTCAGGTTTCTTCAGAGGCCGTTGGCTCAATTGA TTTCCATTCTCCGTGCACCTAAGAGTAAAGATGCGTATACTTCCATTGGTGGTGGCTCACCGCCGTTGCGTAAAATTACTGACGAGCAGGCGTATGCTAT CAAGGATGCTTTACAAGCAAAGGATATCAAGAAGGATAGGGTAACAAAGCTTGTTGTGCTGCCACTTTATCCACAGTTTTCCATATCTAAAACTGGTTCC AGTCTCCGTGTTCTCCAGAATATATTCAGGGAGGATGCATATCTGTCAAGGTTTCCTGTTTCCATCATACAGTCGTGGTATCAACGGCAAGGCTATGCAA ATTCCATGGCCGATTTGATAGAGGAGGAGTTGCAGACATTTACCAAGCCTGCTGAGGTAGTTTCTTTCTTCAGTGCCCATGGAGTGCCAGTCAGTTATGT GGAAGAAGCAGGAGATCCGTACAGAGATCAGATGGAGGATTGCATTCACTTGATAATGCAAGAGCTCAAGGCAAGGGGAGTTCTCAATGATCATACTCTT GCTTACCAGAGCCGAGTTGGACCAGTGCAGTGGTTGAAGCCCTATACCGATGAGGTCCTTGTCGAGCTTGGGAAGAAACGGGTGAAAAGCCTCTTAGCAG TCCCTGTTAGCTTTGTAAGTGAGCACATAGAAACACTCGAAGAAATTGGCATGGAGTACCGGGAACTCGCACTCGAATCCGGGATCAAGAACTGGGGGCG CGTACCTGCATTGGGGTGCACCACGTCCTTCATCGCTGACCTGGCAGACGCAGTTTGTCGAAGCCTTACCATCGGCAAAAGCGATCGTAACCACCTCCTC AAGTAG
AA sequence Show only first row Show all	>Lus10013461 pacid=23155101 polypeptide=Lus10013461 locus=Lus10013461.g ID=Lus10013461.BGIv1.0 annot-version=v1.0 MEAASISAALPLTKLSVSRSCSKIGSAKSVSYRSSAPLQPHDNPPSLVLRSCSCDMLTSIDSVALARRWNVISQSYTGICPFHETSSVQNHTTTTEETIG LLLLNLGGPERLNDDIIRLRRLFRFLQRPLAQLISILRAPKSKDAYTSIGGGSPPLRKITDEQAYAIKDALQAKDIKKDRVTKLVVLPLYPQFSISKTGS SLRVLQNIFREDAYLSRFPVSIIQSWYQRQGYANSMADLIEEELQTFTKPAEVVSFFSAHGVPVSYVEEAGDPYRDQMEDCIHLIMQELKARGVLNDHTL AYQSRVGPVQWLKPYTDEVLVELGKKRVKSLLAVPVSFVSEHIETLEEIGMEYRELALESGIKNWGRVPALGCTTSFIADLADAVCRSLTIGKSDRNHLL K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10013461 [exp]	0	1
AT2G34750			RNA polymerase I specific tran...		Lus10005701 [exp]	110.2	0.7478
AT4G13030			P-loop containing nucleoside t...		Lus10025900 [exp]	121.6	0.7575
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10027354 [exp]	156.7	0.7528
AT1G80700			unknown protein		Lus10002322 [exp]	202.7	0.7422

Compare expression of checked genes

Lus10013461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.