Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01490 431 / 5e-154 phytanoyl-CoA dioxygenase (PhyH) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007925 [exp] 545 / 0 AT2G01490 444 / 2e-159 phytanoyl-CoA dioxygenase (PhyH) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222800 [exp] 464 / 5e-167 AT2G01490 441 / 3e-158 phytanoyl-CoA dioxygenase (PhyH) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF05721 [flax] [poplar] PhyH Phytanoyl-CoA dioxygenase (PhyH)
Representative CDS sequence Show only first row Show all	>Lus10013462 pacid=23155165 polypeptide=Lus10013462 locus=Lus10013462.g ID=Lus10013462.BGIv1.0 annot-version=v1.0 ATGGGAATCGCCGGGGAACTCACCTCCGATCAGCTCAGCTTCTTCAATTCCAACGGTTACCTCGTGGTTGAATCATTCGCCAGCACCGATGAAATCGACG CCATGAGGAAGAGGATGGACCAGCTGCTCGACGATTTCGACTGCTCCTCTTCCTCAGTCTTCTCCACCAAAAATCAGAAAAAGGTAACAGATGATTACTT CTACGATAGCGCTGAGAAGATATCTTTCTTCTTCGAAGAGAAGGCATTTGATGATGGAGGGAACTTGAAGCAGCCTAAGGAACTATCGATAAACAAAGTC GGCCATGCCTTGCATGAGCTTGATCCGGTGTTCAAGAAGTTCTCTTGCTCCGATCGAGTTTCGAGTTTGTTGCTGTCCTTGGGGTACAAGAGGCCGGCCA TCGTTCAGTCGATGTACATCTTCAAGCAACCAGGTATTGGGGGTGAAGTAGTGCCACACCAGGACAACTCATTTCTATACACTGAACCAACCACTTGCAC TGGCCTGTGGGTGGCTCTCGAAGATGCAACGGCTATCAACGGGTGCCTCTGGGCTATTCCTGGATCTCATAAAAATGGGCTCGTGAGAAGATTCATTCGA GGGGAACAAGGTGTGTCGTTTGATCGGCCGTCGCCTTCTTATAACCAGTCAGATTTTGTGCCTGTTGAAGTGAAAGCGGGATCTTTGGTCTTGATTCACG GCGATCTCATTCATCAAAGTTTCGAGAATCAGTCTCCAAAATCAAGGCATGCTTACAGCGTGCATGCTGTGGACACCGATGGTTGCAAATGGGCGACTGA CAATTGGATTCGAAGGAAAGTTGTTCCGGAGCCTCTCTACTCACCAGCTTGA
AA sequence Show only first row Show all	>Lus10013462 pacid=23155165 polypeptide=Lus10013462 locus=Lus10013462.g ID=Lus10013462.BGIv1.0 annot-version=v1.0 MGIAGELTSDQLSFFNSNGYLVVESFASTDEIDAMRKRMDQLLDDFDCSSSSVFSTKNQKKVTDDYFYDSAEKISFFFEEKAFDDGGNLKQPKELSINKV GHALHELDPVFKKFSCSDRVSSLLLSLGYKRPAIVQSMYIFKQPGIGGEVVPHQDNSFLYTEPTTCTGLWVALEDATAINGCLWAIPGSHKNGLVRRFIR GEQGVSFDRPSPSYNQSDFVPVEVKAGSLVLIHGDLIHQSFENQSPKSRHAYSVHAVDTDGCKWATDNWIRRKVVPEPLYSPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10013462 [exp]	0	1
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	1.4	0.9504
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	2.0	0.9548
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10028284 [exp]	4.9	0.9305
AT2G20630		PIA1	PP2C induced by AVRRPM1 (.1.2)		Lus10032673 [exp]	5.0	0.9442
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10037621 [exp]	5.5	0.9416
AT3G46540			ENTH/VHS family protein (.1)		Lus10016556 [exp]	5.8	0.9240
AT5G41810			unknown protein		Lus10001907 [exp]	6.2	0.9450
AT5G65495			unknown protein		Lus10002656 [exp]	6.6	0.9446
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	7.7	0.9341
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10031612 [exp]	10.8	0.9187

Compare expression of checked genes

Lus10013462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.